MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.1 nTPM
HPA Brain:189.6 nTPM
GTEx:71.1 nTPM
FANTOM5:519.5 Scaled Tags Per Million
Pig:230.4 nTPM
Mouse:37.5 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 189.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.4
1830 Male, age 51, unknown 188.5
2411 Female, age 72, unknown 185.9
1833 Male, age 53, unknown 180.3
1870 Female, age 42, unknown 178.0
2019 Male, age 18, unknown 166.5
2828 Female, age 72, unknown 152.0
2586 Male, age 75, left hemisphere 138.3
2666 Male, age 74, left hemisphere 113.1
2219 Male, age 76, both hemispheres 111.5
1827 Male, age 72, unknown 109.4
Dorsal raphe nucleus
nTPM: 115.2
2750 Male, age 76, both hemispheres 198.6
2016 Female, age 72, unknown 125.6
1828 Male, age 53, unknown 104.7
2047 Male, age 72, unknown 74.1
2298 Female, age 72, unknown 72.7
Inferior colliculus
nTPM: 101.7
2849 Male, age 72, unknown 112.8
1848 Female, age 42, unknown 107.4
1890 Male, age 53, unknown 102.8
2097 Female, age 72, unknown 83.8
Median raphe nucleus
nTPM: 93.0
2220 Male, age 76, midline 93.0
Periaquaductal grey, anterior
nTPM: 94.2
2502 Female, age 75, unknown 109.6
1947 Male, age 18, unknown 95.2
1795 Male, age 51, unknown 77.7
Periaquaductal grey, dorsal
nTPM: 79.1
2464 Female, age 72, unknown 121.4
1831 Male, age 72, unknown 77.4
2850 Male, age 76, both hemispheres 62.7
1840 Male, age 53, unknown 54.8
Periaquaductal grey, lateral
nTPM: 90.9
2272 Male, age 74, both hemispheres 102.0
2053 Male, age 18, unknown 98.3
2140 Male, age 76, both hemispheres 72.5
Pretectal area
nTPM: 103.1
2316 Male, age 76, right hemisphere 161.9
1815 Male, age 53, unknown 136.0
2407 Male, age 75, both hemispheres 128.3
2667 Female, age 75, unknown 105.9
2825 Male, age 18, unknown 103.9
1817 Female, age 42, unknown 102.9
2007 Male, age 72, unknown 97.5
2273 Male, age 74, both hemispheres 92.3
2224 Female, age 72, unknown 84.4
1944 Female, age 72, unknown 63.9
1816 Male, age 51, unknown 57.5
Red nucleus
nTPM: 189.6
1865 Male, age 51, unknown 236.1
1904 Male, age 53, unknown 234.3
2823 Male, age 76, right hemisphere 219.0
2769 Male, age 72, unknown 208.0
2227 Male, age 72, unknown 204.9
2785 Male, age 18, unknown 202.8
1821 Female, age 72, unknown 196.2
2503 Female, age 72, unknown 179.8
1954 Female, age 42, unknown 170.3
2588 Male, age 74, left hemisphere 158.5
2584 Male, age 75, left hemisphere 135.3
2725 Female, age 75, unknown 130.0
Substantia nigra
nTPM: 114.5
2583 Male, age 75, right hemisphere 149.1
2590 Female, age 75, unknown 144.8
1851 Male, age 51, unknown 141.7
2409 Female, age 72, unknown 131.7
2699 Male, age 18, unknown 127.1
1889 Female, age 72, unknown 107.3
2241 Male, age 72, unknown 94.8
1941 Male, age 53, unknown 84.9
1916 Female, age 42, unknown 81.9
2665 Male, age 74, both hemispheres 81.3
Superior colliculus
nTPM: 132.6
1913 Female, age 42, unknown 219.2
1995 Male, age 72, unknown 208.6
1895 Male, age 76, right hemisphere 154.9
1839 Male, age 51, unknown 141.3
2587 Male, age 74, left hemisphere 129.9
1796 Male, age 53, unknown 111.7
2668 Female, age 75, unknown 109.7
2664 Male, age 75, both hemispheres 93.7
2087 Female, age 72, unknown 80.4
2261 Male, age 18, unknown 76.9
Ventral tegmental area
nTPM: 127.1
2410 Female, age 72, unknown 156.7
2223 Female, age 72, unknown 153.5
2021 Male, age 53, unknown 121.8
1942 Male, age 51, unknown 112.2
2218 Male, age 76, both hemispheres 112.1
1915 Female, age 42, unknown 106.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.1
Samples: 183

Max nTPM: 264.7
Min nTPM: 12.3
Std nTPM: 40.0
Median nTPM: 58.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 264.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 244.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 220.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 209.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 185.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 164.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 156.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 152.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 151.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 143.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 140.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 519.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 519.5
FF:10158-103A5 76 years, female 519.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 230.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 230.4
Samples: 4

Max nTPM: 349.6
Min nTPM: 155.7
Sample A Female 223.9
Sample B Female 155.7
Sample C Male 192.5
Sample D Male 349.6
Midbrain
nTPM: 205.8
Samples: 4

Max nTPM: 339.0
Min nTPM: 122.3
Sample A Female 339.0
Sample B Female 217.2
Sample C Male 122.3
Sample D Male 144.8
Periaqueductal gray
nTPM: 165.3
Samples: 3

Max nTPM: 186.3
Min nTPM: 134.2
Sample B Female 186.3
Sample C Male 134.2
Sample D Male 175.5
Superior colliculi
nTPM: 166.4
Samples: 4

Max nTPM: 211.8
Min nTPM: 86.5
Sample A Female 193.9
Sample B Female 86.5
Sample C Male 173.5
Sample D Male 211.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.6
Samples: 4

Max nTPM: 38.4
Min nTPM: 35.8
Sample A Male 38.4
Sample B Male 35.8
Sample C Female 37.8
Sample D Female 38.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
70946147 Antisense, RP_050310_01_D11, Mouse strain C57BL/6J (56 days, male) 4.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo