A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
4.6
nTPM
Schmiedel:
45.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.1
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.0
P10809_1013
1.3
P10809_1033
0.6
P10809_1052
0.5
P10809_1071
0.0
P10809_1093
2.9
P10809_1103
1.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.6
Monaco sample
nTPM
NK-cell nTPM: 4.6
Samples: 4
Max nTPM: 5.6
Min nTPM: 3.1
RHH5316_R3683
5.6
RHH5224_R3596
3.1
RHH5253_R3625
4.0
RHH5282_R3654
5.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.5
Schmiedel sample id
TPM
NK-cell TPM: 45.5
Samples: 90
Max TPM: 66.7
Min TPM: 23.2
NK_1
66.7
NK_2
62.2
NK_3
61.1
NK_4
59.7
NK_5
59.4
NK_6
58.1
NK_7
56.1
NK_8
55.8
NK_9
55.6
NK_10
55.6
NK_11
55.6
NK_12
55.3
NK_13
54.6
NK_14
54.5
NK_15
54.1
NK_16
54.0
NK_17
53.9
NK_18
53.7
NK_19
53.7
NK_20
53.6
NK_21
53.2
NK_22
52.9
NK_23
52.3
NK_24
52.1
NK_25
52.1
NK_26
51.8
NK_27
51.6
NK_28
50.9
NK_29
50.8
NK_30
50.4
NK_31
50.4
NK_32
50.2
NK_33
50.1
NK_34
49.6
NK_35
49.4
NK_36
49.0
NK_37
48.5
NK_38
48.2
NK_39
48.1
NK_40
48.1
NK_41
48.1
NK_42
47.8
NK_43
47.3
NK_44
47.2
NK_45
47.0
NK_46
46.4
NK_47
46.2
NK_48
45.9
NK_49
45.7
NK_50
45.3
NK_51
45.0
NK_52
43.7
NK_53
43.6
NK_54
43.4
NK_55
43.1
NK_56
42.9
NK_57
42.7
NK_58
42.6
NK_59
42.4
NK_60
42.3
NK_61
42.2
NK_62
42.0
NK_63
41.4
NK_64
41.3
NK_65
41.2
NK_66
41.2
NK_67
41.1
NK_68
40.3
NK_69
39.3
NK_70
39.0
NK_71
38.7
NK_72
38.5
NK_73
37.6
NK_74
37.4
NK_75
36.5
NK_76
35.9
NK_77
34.4
NK_78
34.1
NK_79
33.9
NK_80
33.4
NK_81
32.7
NK_82
32.7
NK_83
32.0
NK_84
30.4
NK_85
29.7
NK_86
26.9
NK_87
26.7
NK_88
26.1
NK_89
23.8
NK_90
23.2
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