A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
129.3
nTPM
Monaco:
73.2
nTPM
Schmiedel:
10.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.3
HPA sample
nTPM
Classical monocyte nTPM: 129.3
Samples: 6
Max nTPM: 149.9
Min nTPM: 95.9
P10809_1003
127.9
P10809_1020
135.5
P10809_1039
142.9
P10809_1058
95.9
P10809_1080
123.7
P10809_1107
149.9
Intermediate monocyte nTPM: 126.1
Samples: 6
Max nTPM: 171.6
Min nTPM: 96.9
P10809_1004
106.4
P10809_1023
161.2
P10809_1042
116.9
P10809_1061
103.8
P10809_1081
96.9
P10809_1108
171.6
Non-classical monocyte nTPM: 118.0
Samples: 5
Max nTPM: 174.1
Min nTPM: 85.7
P10809_1005
96.5
P10809_1053
132.7
P10809_1072
101.2
P10809_1082
85.7
P10809_1109
174.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.2
Monaco sample
nTPM
Classical monocyte nTPM: 60.5
Samples: 4
Max nTPM: 72.4
Min nTPM: 34.3
RHH5313_R3680
65.6
RHH5221_R3593
34.3
RHH5250_R3622
69.7
RHH5279_R3651
72.4
Intermediate monocyte nTPM: 73.3
Samples: 4
Max nTPM: 90.7
Min nTPM: 55.8
RHH5314_R3681
90.4
RHH5222_R3594
56.1
RHH5251_R3623
55.8
RHH5280_R3652
90.7
Non-classical monocyte nTPM: 47.7
Samples: 4
Max nTPM: 56.2
Min nTPM: 32.9
RHH5315_R3682
56.2
RHH5223_R3595
32.9
RHH5252_R3624
48.0
RHH5281_R3653
53.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.8
Schmiedel sample id
TPM
Classical monocyte TPM: 10.8
Samples: 91
Max TPM: 19.2
Min TPM: 4.3
MONOCYTES_1
19.2
MONOCYTES_2
19.1
MONOCYTES_3
18.6
MONOCYTES_4
17.5
MONOCYTES_5
16.9
MONOCYTES_6
16.5
MONOCYTES_7
16.1
MONOCYTES_8
16.1
MONOCYTES_9
15.9
MONOCYTES_10
15.6
MONOCYTES_11
15.2
MONOCYTES_12
15.0
MONOCYTES_13
14.6
MONOCYTES_14
14.6
MONOCYTES_15
14.6
MONOCYTES_16
14.6
MONOCYTES_17
14.3
MONOCYTES_18
14.2
MONOCYTES_19
14.1
MONOCYTES_20
14.0
MONOCYTES_21
13.9
MONOCYTES_22
13.9
MONOCYTES_23
13.6
MONOCYTES_24
13.5
MONOCYTES_25
13.4
MONOCYTES_26
13.3
MONOCYTES_27
13.3
MONOCYTES_28
13.0
MONOCYTES_29
12.3
MONOCYTES_30
12.1
MONOCYTES_31
12.0
MONOCYTES_32
12.0
MONOCYTES_33
11.9
MONOCYTES_34
11.8
MONOCYTES_35
11.8
MONOCYTES_36
11.7
MONOCYTES_37
11.4
MONOCYTES_38
11.2
MONOCYTES_39
11.0
MONOCYTES_40
10.9
MONOCYTES_41
10.5
MONOCYTES_42
10.5
MONOCYTES_43
10.4
MONOCYTES_44
10.4
MONOCYTES_45
10.3
MONOCYTES_46
10.2
MONOCYTES_47
10.0
MONOCYTES_48
10.0
MONOCYTES_49
10.0
MONOCYTES_50
9.9
MONOCYTES_51
9.8
MONOCYTES_52
9.7
MONOCYTES_53
9.6
MONOCYTES_54
9.6
MONOCYTES_55
9.5
MONOCYTES_56
9.5
MONOCYTES_57
9.4
MONOCYTES_58
9.3
MONOCYTES_59
9.2
MONOCYTES_60
9.1
MONOCYTES_61
9.1
MONOCYTES_62
8.7
MONOCYTES_63
8.7
MONOCYTES_64
8.6
MONOCYTES_65
8.6
MONOCYTES_66
8.6
MONOCYTES_67
8.5
MONOCYTES_68
8.4
MONOCYTES_69
8.3
MONOCYTES_70
8.2
MONOCYTES_71
8.2
MONOCYTES_72
7.9
MONOCYTES_73
7.8
MONOCYTES_74
7.7
MONOCYTES_75
7.7
MONOCYTES_76
7.4
MONOCYTES_77
7.4
MONOCYTES_78
7.2
MONOCYTES_79
6.1
MONOCYTES_80
6.1
MONOCYTES_81
6.0
MONOCYTES_82
6.0
MONOCYTES_83
5.7
MONOCYTES_84
5.7
MONOCYTES_85
5.5
MONOCYTES_86
5.4
MONOCYTES_87
5.3
MONOCYTES_88
4.8
MONOCYTES_89
4.8
MONOCYTES_90
4.8
MONOCYTES_91
4.3
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Non-classical monocyte TPM: 10.3
Samples: 90
Max TPM: 18.5
Min TPM: 3.0
M2_1
18.5
M2_2
17.2
M2_3
17.1
M2_4
16.7
M2_5
16.6
M2_6
16.5
M2_7
16.4
M2_8
16.4
M2_9
16.3
M2_10
15.8
M2_11
15.6
M2_12
14.9
M2_13
14.9
M2_14
14.8
M2_15
14.8
M2_16
14.5
M2_17
14.0
M2_18
14.0
M2_19
13.8
M2_20
13.6
M2_21
13.2
M2_22
12.8
M2_23
12.8
M2_24
12.6
M2_25
12.5
M2_26
12.4
M2_27
12.3
M2_28
12.2
M2_29
12.0
M2_30
12.0
M2_31
11.9
M2_32
11.8
M2_33
11.8
M2_34
11.7
M2_35
11.5
M2_36
11.5
M2_37
11.4
M2_38
11.0
M2_39
11.0
M2_40
10.8
M2_41
10.5
M2_42
10.4
M2_43
10.4
M2_44
10.3
M2_45
10.3
M2_46
10.3
M2_47
10.2
M2_48
10.2
M2_49
10.0
M2_50
10.0
M2_51
9.9
M2_52
9.8
M2_53
9.6
M2_54
9.4
M2_55
9.4
M2_56
9.2
M2_57
9.1
M2_58
9.0
M2_59
8.9
M2_60
8.9
M2_61
8.8
M2_62
8.7
M2_63
8.6
M2_64
8.5
M2_65
8.3
M2_66
8.3
M2_67
8.1
M2_68
8.1
M2_69
8.0
M2_70
7.5
M2_71
6.8
M2_72
6.7
M2_73
6.6
M2_74
6.4
M2_75
6.0
M2_76
5.9
M2_77
5.4
M2_78
5.4
M2_79
5.1
M2_80
4.6
M2_81
4.2
M2_82
4.2
M2_83
4.2
M2_84
4.1
M2_85
3.5
M2_86
3.4
M2_87
3.1
M2_88
3.1
M2_89
3.1
M2_90
3.0
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