BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:317.6 nTPM
HPA Brain:260.8 nTPM
GTEx:317.6 nTPM
FANTOM5:285.7 Scaled Tags Per Million
Macaque:220.4 nTPM
Mouse:126.4 nTPM
Rat:66.7 nTPM
Pig:409.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 260.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.6
2019 Male, age 18, unknown 203.5
2411 Female, age 72, unknown 169.3
2666 Male, age 74, left hemisphere 165.2
2219 Male, age 76, both hemispheres 164.1
2828 Female, age 72, unknown 151.9
1830 Male, age 51, unknown 139.1
1833 Male, age 53, unknown 137.0
1870 Female, age 42, unknown 129.6
1827 Male, age 72, unknown 124.2
2586 Male, age 75, left hemisphere 102.1
Dorsal raphe nucleus
nTPM: 175.2
2750 Male, age 76, both hemispheres 200.0
2047 Male, age 72, unknown 199.5
2298 Female, age 72, unknown 187.5
1828 Male, age 53, unknown 165.9
2016 Female, age 72, unknown 123.3
Inferior colliculus
nTPM: 128.3
1890 Male, age 53, unknown 142.0
2097 Female, age 72, unknown 142.0
2849 Male, age 72, unknown 117.2
1848 Female, age 42, unknown 111.8
Median raphe nucleus
nTPM: 260.8
2220 Male, age 76, midline 260.8
Periaquaductal grey, anterior
nTPM: 138.6
1795 Male, age 51, unknown 151.3
1947 Male, age 18, unknown 135.0
2502 Female, age 75, unknown 129.4
Periaquaductal grey, dorsal
nTPM: 129.0
2850 Male, age 76, both hemispheres 167.1
2464 Female, age 72, unknown 120.3
1831 Male, age 72, unknown 116.5
1840 Male, age 53, unknown 112.1
Periaquaductal grey, lateral
nTPM: 146.1
2272 Male, age 74, both hemispheres 200.0
2140 Male, age 76, both hemispheres 142.4
2053 Male, age 18, unknown 96.0
Pretectal area
nTPM: 163.9
2007 Male, age 72, unknown 217.9
1817 Female, age 42, unknown 213.7
1944 Female, age 72, unknown 191.3
1815 Male, age 53, unknown 189.5
2273 Male, age 74, both hemispheres 174.9
1816 Male, age 51, unknown 164.4
2667 Female, age 75, unknown 162.9
2224 Female, age 72, unknown 144.5
2407 Male, age 75, both hemispheres 131.0
2825 Male, age 18, unknown 106.8
2316 Male, age 76, right hemisphere 105.7
Red nucleus
nTPM: 148.7
2785 Male, age 18, unknown 204.9
1865 Male, age 51, unknown 166.6
2725 Female, age 75, unknown 160.8
2823 Male, age 76, right hemisphere 159.1
1904 Male, age 53, unknown 153.5
2503 Female, age 72, unknown 149.0
1954 Female, age 42, unknown 147.0
2769 Male, age 72, unknown 136.3
2227 Male, age 72, unknown 134.0
1821 Female, age 72, unknown 130.9
2588 Male, age 74, left hemisphere 125.7
2584 Male, age 75, left hemisphere 117.0
Substantia nigra
nTPM: 218.2
1916 Female, age 42, unknown 356.7
1851 Male, age 51, unknown 260.3
2699 Male, age 18, unknown 250.2
1941 Male, age 53, unknown 241.5
2241 Male, age 72, unknown 215.1
1889 Female, age 72, unknown 208.2
2409 Female, age 72, unknown 185.5
2665 Male, age 74, both hemispheres 181.3
2590 Female, age 75, unknown 148.2
2583 Male, age 75, right hemisphere 135.2
Superior colliculus
nTPM: 141.9
2668 Female, age 75, unknown 189.8
2087 Female, age 72, unknown 166.8
2587 Male, age 74, left hemisphere 163.0
1913 Female, age 42, unknown 155.1
1995 Male, age 72, unknown 143.3
2261 Male, age 18, unknown 134.7
1796 Male, age 53, unknown 132.8
1839 Male, age 51, unknown 112.3
2664 Male, age 75, both hemispheres 111.8
1895 Male, age 76, right hemisphere 109.4
Ventral tegmental area
nTPM: 196.8
1915 Female, age 42, unknown 234.3
2218 Male, age 76, both hemispheres 234.1
2410 Female, age 72, unknown 218.1
2223 Female, age 72, unknown 171.7
2021 Male, age 53, unknown 162.1
1942 Male, age 51, unknown 160.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 317.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 317.6
Samples: 183

Max nTPM: 670.2
Min nTPM: 118.9
Std nTPM: 95.0
Median nTPM: 307.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 670.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 619.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 587.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 572.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 565.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 549.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 539.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 485.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 484.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 475.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 464.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 285.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 285.7
FF:10158-103A5 76 years, female 285.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 220.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 220.4
Samples: 1

Max nTPM: 220.4
Min nTPM: 220.4
Sample A 220.4
Midbrain
nTPM: 147.2
Samples: 1

Max nTPM: 147.2
Min nTPM: 147.2
Sample A 147.2
Superior colliculi
nTPM: 174.0
Samples: 1

Max nTPM: 174.0
Min nTPM: 174.0
Sample A 174.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 409.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 403.5
Samples: 3

Max nTPM: 516.1
Min nTPM: 320.7
Sample A Female 516.1
Sample B Female 320.7
Sample C Male 373.7
Midbrain
nTPM: 358.1
Samples: 3

Max nTPM: 460.7
Min nTPM: 296.8
Sample B Female 460.7
Sample C Male 316.9
Sample D Male 296.8
Periaqueductal gray
nTPM: 333.6
Samples: 3

Max nTPM: 356.9
Min nTPM: 310.1
Sample B Female 310.1
Sample C Male 333.9
Sample D Male 356.9
Superior colliculi
nTPM: 409.1
Samples: 4

Max nTPM: 535.2
Min nTPM: 214.7
Sample A Female 535.2
Sample B Female 214.7
Sample C Male 369.6
Sample D Male 517.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 126.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.4
Samples: 4

Max nTPM: 129.5
Min nTPM: 123.8
Sample A 129.5
Sample B 123.8
Sample C 126.6
Sample D 125.7

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 66.7
Rat sample Sample description nTPM
Midbrain
nTPM: 66.7
Samples: 4

Max nTPM: 75.0
Min nTPM: 57.7
Sample A 75.0
Sample A 57.7
Sample A 72.0
Sample A 62.0

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