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RPL11
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  • TISSUE

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  • RPL11
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:544.6 nTPM
HPA Brain:248.1 nTPM
GTEx:544.6 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:631.9 nTPM
Mouse:645.1 nTPM
Allen mouse:13.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 206.5
2666 Male, age 74, left hemisphere 278.3
1870 Female, age 42, unknown 262.4
2586 Male, age 75, left hemisphere 230.9
1833 Male, age 53, unknown 206.5
1830 Male, age 51, unknown 200.2
2828 Female, age 72, unknown 197.8
1827 Male, age 72, unknown 187.9
2219 Male, age 76, both hemispheres 181.2
2019 Male, age 18, unknown 175.7
2411 Female, age 72, unknown 144.4
Dorsal raphe nucleus
nTPM: 195.0
2016 Female, age 72, unknown 222.3
1828 Male, age 53, unknown 203.3
2298 Female, age 72, unknown 193.6
2750 Male, age 76, both hemispheres 190.3
2047 Male, age 72, unknown 165.6
Inferior colliculus
nTPM: 216.4
2849 Male, age 72, unknown 258.9
1890 Male, age 53, unknown 225.3
1848 Female, age 42, unknown 195.3
2097 Female, age 72, unknown 186.0
Median raphe nucleus
nTPM: 226.2
2220 Male, age 76, midline 226.2
Periaquaductal grey, anterior
nTPM: 196.8
2502 Female, age 75, unknown 233.1
1947 Male, age 18, unknown 179.4
1795 Male, age 51, unknown 177.8
Periaquaductal grey, dorsal
nTPM: 202.3
2850 Male, age 76, both hemispheres 248.9
1831 Male, age 72, unknown 202.5
1840 Male, age 53, unknown 181.0
2464 Female, age 72, unknown 176.7
Periaquaductal grey, lateral
nTPM: 190.3
2053 Male, age 18, unknown 220.4
2140 Male, age 76, both hemispheres 198.3
2272 Male, age 74, both hemispheres 152.2
Pretectal area
nTPM: 187.2
2825 Male, age 18, unknown 212.2
1817 Female, age 42, unknown 208.0
1815 Male, age 53, unknown 204.4
2224 Female, age 72, unknown 195.1
1944 Female, age 72, unknown 189.7
1816 Male, age 51, unknown 189.3
2407 Male, age 75, both hemispheres 180.6
2316 Male, age 76, right hemisphere 180.5
2007 Male, age 72, unknown 177.4
2667 Female, age 75, unknown 167.9
2273 Male, age 74, both hemispheres 153.8
Red nucleus
nTPM: 248.1
2503 Female, age 72, unknown 324.0
1865 Male, age 51, unknown 305.4
1821 Female, age 72, unknown 279.4
1904 Male, age 53, unknown 266.9
2725 Female, age 75, unknown 261.7
2588 Male, age 74, left hemisphere 237.9
2227 Male, age 72, unknown 224.8
2584 Male, age 75, left hemisphere 220.3
2769 Male, age 72, unknown 218.8
1954 Female, age 42, unknown 214.8
2785 Male, age 18, unknown 213.7
2823 Male, age 76, right hemisphere 209.1
Substantia nigra
nTPM: 236.6
2699 Male, age 18, unknown 329.9
2665 Male, age 74, both hemispheres 279.6
2241 Male, age 72, unknown 270.5
2409 Female, age 72, unknown 258.3
1851 Male, age 51, unknown 253.1
1916 Female, age 42, unknown 217.5
1889 Female, age 72, unknown 211.6
2590 Female, age 75, unknown 200.2
1941 Male, age 53, unknown 188.2
2583 Male, age 75, right hemisphere 157.0
Superior colliculus
nTPM: 214.9
2587 Male, age 74, left hemisphere 297.4
1913 Female, age 42, unknown 279.8
1995 Male, age 72, unknown 240.8
2668 Female, age 75, unknown 212.0
1796 Male, age 53, unknown 209.6
1895 Male, age 76, right hemisphere 203.4
2664 Male, age 75, both hemispheres 201.8
1839 Male, age 51, unknown 200.8
2261 Male, age 18, unknown 159.7
2087 Female, age 72, unknown 143.8
Ventral tegmental area
nTPM: 223.3
2223 Female, age 72, unknown 265.1
1915 Female, age 42, unknown 239.3
2021 Male, age 53, unknown 227.4
2218 Male, age 76, both hemispheres 220.5
2410 Female, age 72, unknown 200.5
1942 Male, age 51, unknown 187.3

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

544.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 544.6
Samples: 183

Max nTPM: 1732.4
Min nTPM: 146.7
Std nTPM: 239.3
Median nTPM: 491.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1732.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1338.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1192.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1187.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1154.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1120.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1094.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1041.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1021.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1008.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 999.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 992.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 981.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 947.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 918.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 908.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 876.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 871.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 856.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 847.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 815.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 797.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 796.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 794.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 782.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 767.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 761.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 748.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 746.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 743.2
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 736.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 732.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 726.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 718.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 700.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 693.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 686.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 684.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 684.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 679.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 679.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 664.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 661.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 660.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 653.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 649.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 647.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 647.0
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 643.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 641.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 639.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 631.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 629.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 625.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 624.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 621.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 618.5
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 617.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 617.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 611.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 605.9
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 604.8
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 603.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 598.1
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 597.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 596.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 586.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 583.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 580.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 576.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 576.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 571.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 571.0
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 567.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 564.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 563.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 556.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 553.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 541.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 540.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 540.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 537.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 530.1
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 524.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 518.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 517.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 500.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 499.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 494.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 493.9
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 492.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 491.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 488.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 487.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 486.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 474.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 468.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 464.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 463.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 462.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 461.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 452.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 451.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 449.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 447.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 446.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 446.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 443.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 441.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 437.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 434.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 433.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 432.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 431.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 428.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 427.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 427.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 423.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 420.5
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 420.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 418.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 417.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 411.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 410.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 409.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 408.5
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 403.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 398.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 398.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 396.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 395.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 395.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 394.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 391.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 385.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 384.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 383.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 379.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 370.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 370.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 365.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 360.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 358.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 357.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 355.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 354.9
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 354.1
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 351.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 346.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 346.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 338.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 329.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 329.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 328.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 325.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 324.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 323.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 322.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 320.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 318.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 314.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 306.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 302.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 302.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 298.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 294.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 293.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 293.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 290.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 283.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 278.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 278.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 277.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 266.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 265.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 263.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 256.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 240.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 232.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 213.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 173.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 150.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 146.7
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.4
FF:10158-103A5 76 years, female 100.4

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

631.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 631.9
Samples: 4

Max nTPM: 763.1
Min nTPM: 528.4
Sample A Female 763.1
Sample B Female 662.9
Sample C Male 528.4
Sample D Male 573.1
Midbrain
nTPM: 621.0
Samples: 4

Max nTPM: 887.4
Min nTPM: 438.6
Sample A Female 887.4
Sample B Female 669.7
Sample C Male 488.1
Sample D Male 438.6
Periaqueductal gray
nTPM: 511.5
Samples: 3

Max nTPM: 528.8
Min nTPM: 481.9
Sample B Female 528.8
Sample C Male 523.8
Sample D Male 481.9
Superior colliculi
nTPM: 611.2
Samples: 4

Max nTPM: 691.9
Min nTPM: 555.3
Sample A Female 691.9
Sample B Female 621.5
Sample C Male 576.1
Sample D Male 555.3

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

645.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 645.1
Samples: 4

Max nTPM: 706.1
Min nTPM: 560.6
Sample A Male 706.1
Sample B Male 636.7
Sample C Female 560.6
Sample D Female 676.8

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.4
276067 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 13.4
199144 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 8.7

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