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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:358.8 nTPM
GTEx:358.8 nTPM
FANTOM5:134.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 358.8
Samples: 105

Max nTPM: 565.8
Min nTPM: 139.0
Std nTPM: 78.6
Median nTPM:
379_1 60 years, male 565.8
384_1 83 years, male 543.7
452_1 88 years, female 500.6
218_1 71 years, female 499.2
4_1 88 years, female 496.9
189_1 76 years, male 490.5
389_1 86 years, female 482.0
35_1 74 years, female 473.9
237_1 82 years, male 464.5
2_1 77 years, female 443.1
447_1 81 years, male 442.4
120_1 70 years, female 440.9
321_1 62 years, female 437.6
145_1 84 years, male 435.4
394_1 75 years, female 432.6
265_1 87 years, male 432.3
153_1 70 years, female 431.8
376_1 75 years, female 430.0
264_1 73 years, female 428.7
17_1 71 years, male 421.6
173_1 67 years, male 417.9
246_1 77 years, male 416.4
286_1 68 years, female 414.2
375_1 74 years, female 413.7
396_1 62 years, male 412.5
386_1 76 years, male 411.4
354_1 81 years, female 409.7
243_1 75 years, male 408.6
295_1 61 years, female 406.6
137_1 83 years, male 404.5
322_1 76 years, male 404.5
377_1 82 years, female 400.5
355_1 70 years, female 398.0
348_1 84 years, male 395.5
126_1 63 years, male 393.2
319_1 81 years, male 392.8
254_1 77 years, female 392.6
6_1 73 years, female 390.2
163_1 78 years, male 389.7
177_1 74 years, male 388.5
526_1 61 years, male 388.5
315_1 62 years, female 384.4
404_1 82 years, female 382.8
172_1 72 years, female 379.4
229_1 69 years, female 375.0
349_1 83 years, male 373.5
425_1 59 years, female 373.3
307_1 66 years, female 369.2
316_1 62 years, male 368.7
347_1 72 years, male 367.9
351_1 91 years, male 366.7
503_1 68 years, male 366.7
314_1 67 years, male 366.0
405_1 91 years, male 363.1
320_1 89 years, female 363.0
350_1 84 years, female 355.2
317_1 60 years, male 355.1
311_1 78 years, male 353.7
41_1 94 years, female 352.0
115_1 83 years, male 348.7
406_1 79 years, male 348.5
217_1 76 years, male 340.0
18_1 88 years, male 338.7
288_1 66 years, female 338.2
42_1 85 years, male 338.1
109_1 81 years, female 337.6
353_1 82 years, female 336.6
308_1 70 years, female 335.6
139_1 64 years, female 333.6
99_1 64 years, male 332.2
495_1 57 years, female 330.1
117_1 61 years, male 329.6
251_1 78 years, male 326.9
335_1 73 years, female 324.6
352_1 62 years, male 323.3
468_1 89 years, male 320.8
119_1 70 years, female 319.5
499_1 55 years, female 311.6
506_1 65 years, male 310.8
480_1 63 years, male 310.7
291_1 76 years, male 309.3
518_1 75 years, female 305.3
356_1 87 years, female 304.6
517_1 88 years, male 301.9
318_1 68 years, male 295.5
142_1 61 years, female 293.5
293_1 68 years, female 290.5
266_1 85 years, male 289.1
162_1 79 years, female 287.3
32_1 67 years, male 283.2
313_1 79 years, female 281.7
324_1 76 years, male 281.5
9_1 66 years, female 278.6
414_1 84 years, female 263.1
81_1 67 years, male 258.6
292_1 71 years, male 250.2
501_1 88 years, male 245.9
415_1 77 years, female 235.0
89_1 63 years, male 232.7
43_1 64 years, female 229.0
466_1 57 years, female 226.5
149_1 88 years, male 178.0
491_1 89 years, female 175.4
413_1 59 years, female 142.4
490_1 67 years, female 139.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 134.8
FF:10030-101E3 24-65 years, mixed 134.8

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