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  • RPS8
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1062.6 nTPM
HPA Brain:393.6 nTPM
GTEx:1062.6 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:236.8 nTPM
Mouse:371.3 nTPM
Allen mouse:9.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.6
Sample id Sample description nTPM
Amygdala
nTPM: 393.6
2695 Female, age 67, right hemisphere 481.8
2514 Male, age 75, right hemisphere 417.4
1987 Female, age 91, left hemisphere 378.4
2517 Female, age 94, left hemisphere 353.9
2814 Male, age 76, right hemisphere 336.4
Basal amygdala
nTPM: 330.7
2827 Female, age 67, right hemisphere 458.4
2609 Male, age 75, right hemisphere 369.0
2110 Male, age 80, left hemisphere 335.1
2685 Female, age 94, left hemisphere 304.8
1955 Male, age 76, both hemispheres 278.9
2243 Female, age 91, right hemisphere 237.7
Central amygdala
nTPM: 373.5
2826 Female, age 94, left hemisphere 623.9
2515 Male, age 75, right hemisphere 399.6
1905 Male, age 76, both hemispheres 314.2
2239 Male, age 80, left hemisphere 271.2
2701 Female, age 91, right hemisphere 258.6
Corticomedial amygdala
nTPM: 291.1
2428 Male, age 75, right hemisphere 372.1
2829 Male, age 80, left hemisphere 319.3
2535 Female, age 67, right hemisphere 295.7
2429 Female, age 94, left hemisphere 267.3
2242 Female, age 91, right hemisphere 255.1
2240 Male, age 76, both hemispheres 237.1
Lateral amygdala
nTPM: 392.4
2830 Female, age 67, right hemisphere 632.9
2516 Male, age 75, right hemisphere 458.9
2534 Female, age 94, left hemisphere 406.5
2256 Male, age 80, left hemisphere 332.2
1883 Male, age 76, both hemispheres 274.6
2255 Female, age 91, right hemisphere 249.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1062.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1062.6
Samples: 181

Max nTPM: 3106.0
Min nTPM: 549.3
Std nTPM: 384.5
Median nTPM: 979.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3106.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2880.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2853.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2376.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2114.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2024.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1963.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1886.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1813.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1731.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1682.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1577.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1561.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1513.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1493.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1471.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1460.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1423.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1422.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1418.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1373.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1369.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1355.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1355.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1348.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1345.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1343.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1342.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1313.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1305.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1301.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1297.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1267.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1256.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1249.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1238.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1231.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1227.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1221.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1217.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1217.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1204.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1200.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1199.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1196.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1187.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1183.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1165.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1155.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1148.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1147.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1144.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1126.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1124.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1119.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1118.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1101.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1083.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1081.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1080.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1078.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1078.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1075.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1075.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1074.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1072.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1071.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1069.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1061.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1051.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1051.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1049.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1043.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1043.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1043.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1033.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1031.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1029.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1025.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1025.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1011.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1010.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1003.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 998.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 991.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 991.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 989.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 982.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 981.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 980.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 979.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 978.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 976.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 976.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 972.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 962.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 959.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 957.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 954.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 951.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 947.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 940.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 940.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 938.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 938.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 937.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 932.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 924.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 922.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 921.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 920.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 919.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 916.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 906.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 901.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 896.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 892.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 884.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 879.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 876.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 876.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 875.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 872.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 866.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 865.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 861.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 859.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 859.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 858.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 856.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 852.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 850.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 848.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 848.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 846.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 845.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 841.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 826.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 818.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 811.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 810.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 810.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 810.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 808.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 802.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 801.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 789.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 789.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 782.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 771.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 766.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 764.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 761.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 760.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 758.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 757.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 753.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 751.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 742.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 734.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 734.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 729.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 723.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 722.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 714.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 712.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 700.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 693.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 680.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 677.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 677.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 669.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 666.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 665.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 661.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 639.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 621.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 598.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 588.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 576.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 549.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 16.0
FF:10151-102I7 76 years, female 16.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.8
Pig sample Sample description nTPM
Amygdala
nTPM: 236.9
Samples: 4

Max nTPM: 294.4
Min nTPM: 146.3
Sample A Female 262.8
Sample B Female 294.4
Sample C Male 243.9
Sample D Male 146.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 371.3
Samples: 4

Max nTPM: 403.8
Min nTPM: 334.0
Sample A Male 334.0
Sample B Male 384.5
Sample C Female 403.8
Sample D Female 362.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.5
69549280 Antisense, RP_050126_02_C10, Mouse strain C57BL/6J (56 days, male) 9.5

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