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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:873.3 nTPM
HPA Brain:299.7 nTPM
GTEx:873.3 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:278.8 nTPM
Mouse:351.2 nTPM
Allen mouse:10.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

299.7
Sample id Sample description nTPM
Hippocampus
nTPM: 299.7
1898 Male, age 80, left hemisphere 363.5
2529 Female, age 94, left hemisphere 309.7
2621 Female, age 67, right hemisphere 307.0
1855 Male, age 76, left hemisphere 287.4
1911 Female, age 85, right hemisphere 278.5
2148 Female, age 91, left hemisphere 252.1
Dentate gyrus
nTPM: 295.7
2530 Female, age 94, left hemisphere 384.6
2010 Male, age 76, both hemispheres 327.9
1927 Female, age 91, both hemispheres 274.5
2531 Female, age 67, both hemispheres 271.1
2528 Male, age 74, both hemispheres 264.7
2246 Female, age 85, both hemispheres 251.7
Entorhinal gyrus
nTPM: 294.2
2686 Male, age 75, right hemisphere 356.3
2117 Female, age 91, right hemisphere 310.6
1787 Male, age 76, left hemisphere 295.0
1938 Female, age 85, left hemisphere 289.0
2764 Male, age 80, right hemisphere 287.9
2613 Female, age 94, left hemisphere 226.7
Hippocampus, CA1
nTPM: 278.3
2045 Male, age 76, both hemispheres 307.5
2082 Female, age 91, right hemisphere 301.2
1873 Female, age 85, both hemispheres 292.8
2749 Male, age 80, left hemisphere 249.0
2527 Male, age 74, both hemispheres 240.9
Hippocampus, CA2
nTPM: 295.8
1963 Male, age 80, left hemisphere 333.3
1940 Female, age 85, left hemisphere 311.8
1892 Male, age 76, both hemispheres 305.6
2113 Female, age 91, right hemisphere 280.9
2249 Male, age 74, both hemispheres 277.0
2437 Female, age 94, left hemisphere 266.2
Hippocampus, CA3
nTPM: 257.1
1867 Male, age 76, both hemispheres 317.6
1891 Female, age 85, both hemispheres 305.1
2861 Female, age 67, both hemispheres 252.0
2436 Male, age 74, both hemispheres 244.6
2137 Male, age 80, left hemisphere 224.4
2620 Female, age 94, left hemisphere 199.2
Parahippocampal cortex
nTPM: 257.9
2018 Male, age 76, both hemispheres 357.0
1850 Male, age 80, both hemispheres 284.0
2250 Female, age 67, right hemisphere 278.8
1933 Female, age 85, both hemispheres 277.6
1990 Female, age 91, right hemisphere 265.8
2532 Female, age 72, left hemisphere 244.2
2692 Male, age 74, both hemispheres 230.3
2245 Female, age 91, both hemispheres 228.5
2693 Female, age 94, both hemispheres 215.0
2622 Female, age 67, right hemisphere 198.1
Perirhinal gyrus
nTPM: 280.8
1841 Female, age 85, right hemisphere 307.0
1847 Female, age 91, left hemisphere 303.8
1794 Male, age 80, right hemisphere 289.5
2848 Male, age 76, right hemisphere 271.4
2521 Female, age 94, right hemisphere 232.5
Subiculum
nTPM: 285.3
2042 Male, age 76, both hemispheres 353.5
1977 Female, age 85, both hemispheres 310.3
2729 Female, age 91, right hemisphere 282.8
1901 Male, age 80, both hemispheres 278.0
2438 Female, age 94, left hemisphere 246.8
2619 Male, age 74, both hemispheres 240.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

873.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 873.3
Samples: 255

Max nTPM: 2540.0
Min nTPM: 393.5
Std nTPM: 291.9
Median nTPM: 811.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2540.0
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 2158.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 2107.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 1836.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 1777.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1644.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1617.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1546.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1508.6
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 1507.2
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 1504.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1416.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 1384.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 1367.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1338.7
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 1324.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1315.7
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 1313.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1307.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1285.8
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 1284.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1267.9
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 1251.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1240.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 1235.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1219.4
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 1203.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 1198.7
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 1190.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1179.4
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 1171.4
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1148.2
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1146.9
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 1144.5
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 1144.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1139.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1136.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 1131.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1122.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1116.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 1116.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1106.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1102.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1100.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 1096.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1094.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1092.9
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 1090.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1082.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1077.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1077.1
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 1075.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1067.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1062.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1050.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1046.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1015.3
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 1010.8
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 1010.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1009.8
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 1008.0
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 988.1
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 983.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 982.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 974.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 973.3
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 971.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 970.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 967.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 964.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 962.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 961.3
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 959.7
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 959.5
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 957.5
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 941.0
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 940.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 938.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 938.0
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 934.3
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 931.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 929.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 926.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 923.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 917.3
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 909.3
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 905.8
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 901.4
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 901.4
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 900.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 898.8
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 898.2
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 894.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 892.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 889.7
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 881.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 879.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 874.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 874.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 871.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 870.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 868.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 867.8
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 862.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 858.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 855.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 854.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 854.2
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 849.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 846.3
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 842.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 842.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 841.2
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 841.1
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 840.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 836.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 834.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 831.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 829.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 828.4
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 828.3
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 825.5
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 822.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 821.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 814.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 812.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 811.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 811.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 808.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 804.5
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 804.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 799.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 791.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 790.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 790.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 787.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 783.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 782.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 780.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 780.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 779.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 779.3
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 778.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 774.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 772.8
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 767.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 767.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 766.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 759.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 757.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 757.1
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 749.9
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 748.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 746.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 746.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 746.1
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 743.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 742.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 741.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 740.2
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 738.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 737.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 734.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 733.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 731.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 730.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 729.3
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 726.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 723.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 717.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 717.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 715.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 715.0
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 710.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 710.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 709.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 707.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 705.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 704.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 703.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 703.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 703.6
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 700.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 698.0
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 697.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 695.9
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 693.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 692.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 691.5
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 690.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 689.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 687.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 685.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 685.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 680.1
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 679.8
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 679.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 665.1
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 664.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 664.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 663.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 662.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 659.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 653.0
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 648.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 645.2
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 644.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 644.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 644.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 643.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 639.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 639.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 634.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 633.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 633.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 631.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 631.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 625.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 620.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 616.5
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 615.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 613.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 612.2
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 612.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 605.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 604.1
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 602.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 600.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 600.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 596.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 596.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 596.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 593.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 588.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 583.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 580.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 579.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 574.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 572.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 572.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 568.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 560.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 556.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 544.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 531.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 527.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 517.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 502.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 500.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 493.4
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 470.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 468.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 462.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 427.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 393.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.1
FF:10153-102I9 76 years, female 12.9
FF:10169-103B7 60 years, female 11.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.8
Pig sample Sample description nTPM
Subiculum
nTPM: 237.1
Samples: 4

Max nTPM: 326.2
Min nTPM: 196.8
Sample A Female 326.2
Sample B Female 225.1
Sample C Male 196.8
Sample D Male 200.3
Dorsal hippocampus
nTPM: 278.9
Samples: 4

Max nTPM: 364.9
Min nTPM: 176.9
Sample A Female 364.9
Sample B Female 254.1
Sample C Male 319.5
Sample D Male 176.9
Entorhinal cortex
nTPM: 237.1
Samples: 4

Max nTPM: 308.8
Min nTPM: 174.3
Sample A Female 191.6
Sample B Female 308.8
Sample C Male 273.7
Sample D Male 174.3
Ventral hippocampus
nTPM: 241.7
Samples: 4

Max nTPM: 295.8
Min nTPM: 203.4
Sample A Female 246.6
Sample B Female 203.4
Sample C Male 295.8
Sample D Male 221.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 344.4
Samples: 4

Max nTPM: 364.5
Min nTPM: 303.5
Sample A Male 353.8
Sample B Male 355.8
Sample C Female 364.5
Sample D Female 303.5
Hippocampal formation
nTPM: 351.2
Samples: 4

Max nTPM: 393.2
Min nTPM: 321.3
Sample A Male 393.2
Sample B Male 332.1
Sample C Female 321.3
Sample D Female 358.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.5
69549280 Antisense, RP_050126_02_C10, Mouse strain C57BL/6J (56 days, male) 10.5

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