MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:152.6 nTPM
HPA Brain:73.2 nTPM
GTEx:152.6 nTPM
FANTOM5:99.8 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:121.3 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.2
1827 Male, age 72, unknown 61.7
1870 Female, age 42, unknown 60.3
2828 Female, age 72, unknown 55.5
1833 Male, age 53, unknown 55.3
2411 Female, age 72, unknown 54.9
2019 Male, age 18, unknown 53.2
2586 Male, age 75, left hemisphere 49.2
2666 Male, age 74, left hemisphere 47.9
2219 Male, age 76, both hemispheres 47.8
1830 Male, age 51, unknown 46.3
Dorsal raphe nucleus
nTPM: 73.2
2298 Female, age 72, unknown 97.7
2016 Female, age 72, unknown 72.0
1828 Male, age 53, unknown 71.7
2047 Male, age 72, unknown 66.9
2750 Male, age 76, both hemispheres 57.7
Inferior colliculus
nTPM: 61.6
2097 Female, age 72, unknown 65.3
1848 Female, age 42, unknown 60.6
1890 Male, age 53, unknown 60.5
2849 Male, age 72, unknown 60.0
Median raphe nucleus
nTPM: 67.0
2220 Male, age 76, midline 67.0
Periaquaductal grey, anterior
nTPM: 60.8
1795 Male, age 51, unknown 61.8
1947 Male, age 18, unknown 61.4
2502 Female, age 75, unknown 59.3
Periaquaductal grey, dorsal
nTPM: 70.8
2850 Male, age 76, both hemispheres 90.8
1840 Male, age 53, unknown 73.8
1831 Male, age 72, unknown 61.7
2464 Female, age 72, unknown 56.7
Periaquaductal grey, lateral
nTPM: 71.7
2272 Male, age 74, both hemispheres 81.7
2140 Male, age 76, both hemispheres 68.3
2053 Male, age 18, unknown 65.1
Pretectal area
nTPM: 63.2
2273 Male, age 74, both hemispheres 81.3
2224 Female, age 72, unknown 75.7
1817 Female, age 42, unknown 72.5
2667 Female, age 75, unknown 70.2
2825 Male, age 18, unknown 65.7
1944 Female, age 72, unknown 60.6
1816 Male, age 51, unknown 60.3
1815 Male, age 53, unknown 60.0
2007 Male, age 72, unknown 57.9
2316 Male, age 76, right hemisphere 49.6
2407 Male, age 75, both hemispheres 41.3
Red nucleus
nTPM: 56.4
1821 Female, age 72, unknown 74.6
2503 Female, age 72, unknown 62.4
2725 Female, age 75, unknown 61.5
1865 Male, age 51, unknown 58.6
2823 Male, age 76, right hemisphere 58.3
2227 Male, age 72, unknown 56.6
1904 Male, age 53, unknown 56.4
1954 Female, age 42, unknown 56.2
2769 Male, age 72, unknown 55.5
2588 Male, age 74, left hemisphere 49.6
2785 Male, age 18, unknown 48.0
2584 Male, age 75, left hemisphere 38.6
Substantia nigra
nTPM: 68.8
1916 Female, age 42, unknown 83.3
2699 Male, age 18, unknown 80.8
1851 Male, age 51, unknown 80.2
2241 Male, age 72, unknown 78.9
2409 Female, age 72, unknown 69.9
1889 Female, age 72, unknown 67.4
1941 Male, age 53, unknown 66.3
2665 Male, age 74, both hemispheres 61.5
2590 Female, age 75, unknown 57.7
2583 Male, age 75, right hemisphere 42.1
Superior colliculus
nTPM: 57.3
2587 Male, age 74, left hemisphere 69.9
1796 Male, age 53, unknown 61.4
1895 Male, age 76, right hemisphere 58.4
2261 Male, age 18, unknown 56.6
1839 Male, age 51, unknown 55.9
1995 Male, age 72, unknown 55.5
1913 Female, age 42, unknown 55.4
2668 Female, age 75, unknown 55.0
2087 Female, age 72, unknown 52.3
2664 Male, age 75, both hemispheres 52.0
Ventral tegmental area
nTPM: 64.6
1915 Female, age 42, unknown 78.3
2218 Male, age 76, both hemispheres 67.8
2410 Female, age 72, unknown 62.5
1942 Male, age 51, unknown 61.1
2223 Female, age 72, unknown 60.1
2021 Male, age 53, unknown 57.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 152.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.6
Samples: 183

Max nTPM: 277.3
Min nTPM: 79.8
Std nTPM: 30.1
Median nTPM: 147.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 277.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 237.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 236.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 217.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 213.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 212.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 211.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 210.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 208.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 207.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 206.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 99.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.8
FF:10158-103A5 76 years, female 99.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.5
Samples: 4

Max nTPM: 50.3
Min nTPM: 37.6
Sample A Female 50.3
Sample B Female 38.2
Sample C Male 44.0
Sample D Male 37.6
Midbrain
nTPM: 47.6
Samples: 4

Max nTPM: 52.4
Min nTPM: 42.9
Sample A Female 52.4
Sample B Female 47.8
Sample C Male 47.1
Sample D Male 42.9
Periaqueductal gray
nTPM: 39.8
Samples: 3

Max nTPM: 42.1
Min nTPM: 37.9
Sample B Female 39.5
Sample C Male 42.1
Sample D Male 37.9
Superior colliculi
nTPM: 45.5
Samples: 4

Max nTPM: 49.4
Min nTPM: 42.4
Sample A Female 46.6
Sample B Female 42.4
Sample C Male 49.4
Sample D Male 43.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 121.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.3
Samples: 4

Max nTPM: 128.6
Min nTPM: 112.6
Sample A Male 128.6
Sample B Male 118.0
Sample C Female 112.6
Sample D Female 126.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
1638 Antisense, RP_040604_01_C09, Mouse strain C57BL/6J (56 days, male) 0.6
1637 Antisense, RP_040604_01_C09, Mouse strain C57BL/6J (56 days, male) 0.4

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