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  • UFC1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:114.5 nTPM
HPA Brain:72.8 nTPM
GTEx:114.5 nTPM
FANTOM5:89.9 Scaled Tags Per Million
Pig:51.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.2
1981 Female, age 72, midline 90.0
2565 Male, age 75, midline 78.1
2048 Male, age 55, midline 73.1
2816 Male, age 47, midline 58.2
2194 Female, age 79, both hemispheres 56.5
Cervical spinal cord, dorsal horn
nTPM: 72.8
2173 Female, age 72, unknown 97.1
2069 Male, age 47, both hemispheres 80.0
2296 Male, age 66, both hemispheres 71.9
2721 Male, age 90, both hemispheres 67.9
1877 Male, age 55, unknown 65.2
2297 Male, age 75, both hemispheres 54.5
Cervical spinal cord, ventral horn
nTPM: 68.7
2098 Female, age 72, unknown 107.1
2809 Male, age 90, both hemispheres 76.7
2295 Male, age 66, both hemispheres 67.1
2480 Male, age 75, both hemispheres 60.5
2068 Male, age 55, unknown 57.2
2820 Female, age 79, both hemispheres 43.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 114.5
Samples: 204

Max nTPM: 205.6
Min nTPM: 72.1
Std nTPM: 20.6
Median nTPM: 111.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 205.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 179.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 169.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 164.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 162.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 160.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 158.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 157.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 154.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 150.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 149.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 147.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 147.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 145.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 144.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 144.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 142.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 141.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 141.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 141.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 139.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 139.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 139.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 139.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 138.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 138.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 137.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 137.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 137.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 136.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 135.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 135.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 135.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 134.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 134.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 133.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 133.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 132.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 132.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 131.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 131.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 131.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 130.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 130.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 129.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 128.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 128.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 127.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 127.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 125.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 124.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 123.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 123.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 123.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 123.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 123.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 123.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 122.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 122.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 122.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 121.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 121.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 121.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 121.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 120.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 120.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 120.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 119.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 119.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 118.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 118.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 117.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 117.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 117.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 117.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 116.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 115.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 115.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 115.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 115.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 115.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 115.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 115.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 114.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 114.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 114.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 114.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 114.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 113.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 113.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 113.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 113.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 113.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 113.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 112.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 112.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 112.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 112.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 111.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 111.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 111.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 111.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 111.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 111.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 110.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 110.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 110.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 110.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 110.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 110.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 110.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 109.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 109.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 109.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 109.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 109.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 108.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 108.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 107.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 107.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 107.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 107.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 107.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 107.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 107.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 107.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 106.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 105.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 105.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 105.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 105.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 104.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 104.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 103.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 103.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 103.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 103.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 103.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 103.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 103.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 102.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 102.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 101.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 101.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 100.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 100.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 100.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 100.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 100.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 100.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 100.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 100.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 99.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 99.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 99.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 99.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 99.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 99.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 98.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 98.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 98.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 98.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 98.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 97.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 97.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 96.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 95.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 95.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 95.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 95.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 95.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 94.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 94.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 93.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 93.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 91.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 91.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 90.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 90.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 89.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 89.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 89.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 88.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 88.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 87.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 87.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 85.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 84.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 83.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 83.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 83.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 82.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 80.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 80.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 80.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 77.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 77.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 77.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 72.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

89.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 89.9
FF:10181-103D1 60 years, female 100.3
FF:10159-103A6 76 years, female 79.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 49.3
Samples: 4

Max nTPM: 59.3
Min nTPM: 40.6
Sample A Female 40.6
Sample B Female 53.7
Sample C Male 59.3
Sample D Male 43.7
Ventral spinal cord
nTPM: 51.2
Samples: 4

Max nTPM: 54.3
Min nTPM: 44.6
Sample A Female 44.6
Sample B Female 54.0
Sample C Male 51.9
Sample D Male 54.3

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