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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:72.9 nTPM
HPA Brain:44.6 nTPM
GTEx:72.9 nTPM
FANTOM5:17.9 Scaled Tags Per Million
Pig:64.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 44.6
1981 Female, age 72, midline 50.3
2565 Male, age 75, midline 46.2
2816 Male, age 47, midline 43.8
2048 Male, age 55, midline 42.7
2194 Female, age 79, both hemispheres 39.8
Cervical spinal cord, dorsal horn
nTPM: 44.6
2173 Female, age 72, unknown 52.3
2296 Male, age 66, both hemispheres 52.0
2721 Male, age 90, both hemispheres 43.3
2069 Male, age 47, both hemispheres 43.1
1877 Male, age 55, unknown 40.0
2297 Male, age 75, both hemispheres 36.8
Cervical spinal cord, ventral horn
nTPM: 40.5
2098 Female, age 72, unknown 49.8
2068 Male, age 55, unknown 40.9
2480 Male, age 75, both hemispheres 39.8
2809 Male, age 90, both hemispheres 39.7
2820 Female, age 79, both hemispheres 37.7
2295 Male, age 66, both hemispheres 35.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 72.9
Samples: 204

Max nTPM: 117.7
Min nTPM: 42.3
Std nTPM: 14.9
Median nTPM: 72.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 117.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 112.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 109.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 108.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 107.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 105.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 104.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 103.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 102.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 101.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 99.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 99.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 98.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 97.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 96.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 96.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 96.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 96.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 94.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 93.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 93.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 92.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 91.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 91.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 90.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 90.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 89.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 89.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 89.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 88.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 88.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 88.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 87.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 86.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 86.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 86.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 84.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 83.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 83.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 83.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 83.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 82.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 82.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 82.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 82.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 82.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 82.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 82.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 81.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 81.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 81.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 81.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 80.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 80.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 80.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 79.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 79.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 79.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 79.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 79.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 79.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 78.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 78.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 78.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 78.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 78.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 78.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 77.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 77.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 77.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 77.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 77.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 77.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 77.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 76.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 76.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 76.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 76.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 76.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 76.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 75.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 75.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 75.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 74.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 74.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 74.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 74.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 74.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 74.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 73.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 73.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 73.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 73.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 72.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 72.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 72.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 72.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 72.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 72.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 72.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 72.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 72.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 71.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 71.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 71.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 71.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 71.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 70.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 70.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 70.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 70.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 70.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 70.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 70.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 70.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 70.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 70.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 70.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 70.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 69.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 69.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 68.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 68.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 68.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 68.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 67.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 67.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 67.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 66.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 66.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 66.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 66.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 65.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 65.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 65.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 65.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 65.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 64.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 64.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 64.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 64.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 64.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 64.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 64.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 63.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 63.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 63.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 63.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 63.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 62.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 62.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 62.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 62.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 61.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 61.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 60.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 60.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 60.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 59.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 59.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 59.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 58.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 58.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 58.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 58.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 57.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 57.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 56.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 55.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 55.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 55.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 54.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 53.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 53.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 53.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 53.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 53.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 52.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 52.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 52.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 52.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 51.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 50.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 50.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 49.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 49.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 48.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 48.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 47.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 45.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 45.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 42.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 17.9
FF:10181-103D1 60 years, female 20.6
FF:10159-103A6 76 years, female 15.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 55.6
Samples: 4

Max nTPM: 65.3
Min nTPM: 51.2
Sample A Female 51.2
Sample B Female 54.4
Sample C Male 65.3
Sample D Male 51.5
Ventral spinal cord
nTPM: 64.5
Samples: 4

Max nTPM: 70.1
Min nTPM: 56.5
Sample A Female 56.5
Sample B Female 70.1
Sample C Male 66.8
Sample D Male 64.5

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