MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.3 nTPM
HPA Brain:43.3 nTPM
GTEx:72.3 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:57.3 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.9
1870 Female, age 42, unknown 44.7
1833 Male, age 53, unknown 41.6
2019 Male, age 18, unknown 40.9
1830 Male, age 51, unknown 40.6
1827 Male, age 72, unknown 40.3
2828 Female, age 72, unknown 39.8
2666 Male, age 74, left hemisphere 36.3
2586 Male, age 75, left hemisphere 36.0
2411 Female, age 72, unknown 34.9
2219 Male, age 76, both hemispheres 33.9
Dorsal raphe nucleus
nTPM: 36.9
2750 Male, age 76, both hemispheres 40.2
1828 Male, age 53, unknown 38.6
2047 Male, age 72, unknown 37.3
2298 Female, age 72, unknown 34.7
2016 Female, age 72, unknown 33.7
Inferior colliculus
nTPM: 36.4
2849 Male, age 72, unknown 37.9
1848 Female, age 42, unknown 37.8
1890 Male, age 53, unknown 35.8
2097 Female, age 72, unknown 34.1
Median raphe nucleus
nTPM: 37.6
2220 Male, age 76, midline 37.6
Periaquaductal grey, anterior
nTPM: 35.9
1947 Male, age 18, unknown 38.2
2502 Female, age 75, unknown 35.0
1795 Male, age 51, unknown 34.4
Periaquaductal grey, dorsal
nTPM: 33.7
2850 Male, age 76, both hemispheres 39.4
1831 Male, age 72, unknown 35.5
2464 Female, age 72, unknown 31.3
1840 Male, age 53, unknown 28.7
Periaquaductal grey, lateral
nTPM: 36.3
2272 Male, age 74, both hemispheres 38.2
2140 Male, age 76, both hemispheres 35.5
2053 Male, age 18, unknown 35.1
Pretectal area
nTPM: 39.9
1944 Female, age 72, unknown 45.9
2667 Female, age 75, unknown 45.2
2273 Male, age 74, both hemispheres 44.9
1815 Male, age 53, unknown 43.4
2007 Male, age 72, unknown 43.0
1817 Female, age 42, unknown 41.3
2407 Male, age 75, both hemispheres 41.1
1816 Male, age 51, unknown 39.5
2224 Female, age 72, unknown 34.6
2825 Male, age 18, unknown 31.2
2316 Male, age 76, right hemisphere 29.2
Red nucleus
nTPM: 43.3
1865 Male, age 51, unknown 49.5
2725 Female, age 75, unknown 48.4
2503 Female, age 72, unknown 47.2
1821 Female, age 72, unknown 47.1
2823 Male, age 76, right hemisphere 45.9
1904 Male, age 53, unknown 45.4
2785 Male, age 18, unknown 44.1
2769 Male, age 72, unknown 41.3
2227 Male, age 72, unknown 39.7
1954 Female, age 42, unknown 38.4
2584 Male, age 75, left hemisphere 37.8
2588 Male, age 74, left hemisphere 34.3
Substantia nigra
nTPM: 42.4
1916 Female, age 42, unknown 52.7
2699 Male, age 18, unknown 50.1
1851 Male, age 51, unknown 45.7
1889 Female, age 72, unknown 44.0
1941 Male, age 53, unknown 43.9
2665 Male, age 74, both hemispheres 43.7
2241 Male, age 72, unknown 38.5
2583 Male, age 75, right hemisphere 37.1
2409 Female, age 72, unknown 34.0
2590 Female, age 75, unknown 33.9
Superior colliculus
nTPM: 38.3
1913 Female, age 42, unknown 45.8
2587 Male, age 74, left hemisphere 41.6
1796 Male, age 53, unknown 40.9
2087 Female, age 72, unknown 39.2
2668 Female, age 75, unknown 37.4
1895 Male, age 76, right hemisphere 37.1
1995 Male, age 72, unknown 37.0
2261 Male, age 18, unknown 36.1
2664 Male, age 75, both hemispheres 34.0
1839 Male, age 51, unknown 33.6
Ventral tegmental area
nTPM: 40.5
2410 Female, age 72, unknown 46.4
2218 Male, age 76, both hemispheres 44.2
2223 Female, age 72, unknown 42.9
1915 Female, age 42, unknown 40.8
1942 Male, age 51, unknown 36.2
2021 Male, age 53, unknown 32.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.3
Samples: 183

Max nTPM: 142.7
Min nTPM: 38.3
Std nTPM: 15.4
Median nTPM: 69.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 142.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 117.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 113.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 113.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 110.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 110.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 109.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 108.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 103.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 102.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.6
Samples: 4

Max nTPM: 68.1
Min nTPM: 44.8
Sample A Female 68.1
Sample B Female 44.8
Sample C Male 48.6
Sample D Male 48.8
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 85.4
Min nTPM: 39.9
Sample A Female 85.4
Sample B Female 53.7
Sample C Male 39.9
Sample D Male 41.8
Periaqueductal gray
nTPM: 42.1
Samples: 3

Max nTPM: 45.3
Min nTPM: 37.6
Sample B Female 43.5
Sample C Male 45.3
Sample D Male 37.6
Superior colliculi
nTPM: 52.5
Samples: 4

Max nTPM: 65.6
Min nTPM: 43.2
Sample A Female 65.6
Sample B Female 43.2
Sample C Male 51.6
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 62.6
Min nTPM: 52.0
Sample A Male 58.0
Sample B Male 52.0
Sample C Female 56.6
Sample D Female 62.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
532623 Antisense, RP_040810_02_F09, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo