BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:120.2 nTPM
HPA Brain:192.3 nTPM
GTEx:120.2 nTPM
FANTOM5:213.5 Scaled Tags Per Million
Macaque:57.1 nTPM
Mouse:92.5 nTPM
Rat:59.3 nTPM
Pig:134.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 192.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.6
1870 Female, age 42, unknown 203.5
1830 Male, age 51, unknown 199.9
2019 Male, age 18, unknown 197.5
2411 Female, age 72, unknown 185.6
1833 Male, age 53, unknown 180.6
2828 Female, age 72, unknown 141.1
2586 Male, age 75, left hemisphere 110.4
2666 Male, age 74, left hemisphere 106.9
1827 Male, age 72, unknown 105.6
2219 Male, age 76, both hemispheres 94.8
Dorsal raphe nucleus
nTPM: 125.7
2750 Male, age 76, both hemispheres 196.5
2016 Female, age 72, unknown 123.8
1828 Male, age 53, unknown 118.9
2298 Female, age 72, unknown 100.6
2047 Male, age 72, unknown 88.6
Inferior colliculus
nTPM: 106.3
1848 Female, age 42, unknown 115.5
1890 Male, age 53, unknown 110.4
2097 Female, age 72, unknown 100.4
2849 Male, age 72, unknown 98.8
Median raphe nucleus
nTPM: 107.8
2220 Male, age 76, midline 107.8
Periaquaductal grey, anterior
nTPM: 103.0
2502 Female, age 75, unknown 121.0
1947 Male, age 18, unknown 106.0
1795 Male, age 51, unknown 82.1
Periaquaductal grey, dorsal
nTPM: 95.7
2464 Female, age 72, unknown 115.6
2850 Male, age 76, both hemispheres 105.4
1831 Male, age 72, unknown 100.7
1840 Male, age 53, unknown 61.0
Periaquaductal grey, lateral
nTPM: 108.8
2272 Male, age 74, both hemispheres 119.1
2053 Male, age 18, unknown 110.1
2140 Male, age 76, both hemispheres 97.1
Pretectal area
nTPM: 106.7
1815 Male, age 53, unknown 139.6
2316 Male, age 76, right hemisphere 139.0
2273 Male, age 74, both hemispheres 122.2
2407 Male, age 75, both hemispheres 114.9
2667 Female, age 75, unknown 112.8
1817 Female, age 42, unknown 110.6
2825 Male, age 18, unknown 105.2
2007 Male, age 72, unknown 101.1
2224 Female, age 72, unknown 97.1
1944 Female, age 72, unknown 69.0
1816 Male, age 51, unknown 62.1
Red nucleus
nTPM: 192.3
1865 Male, age 51, unknown 244.6
1904 Male, age 53, unknown 244.4
1821 Female, age 72, unknown 237.2
2785 Male, age 18, unknown 205.1
2227 Male, age 72, unknown 204.4
1954 Female, age 42, unknown 203.1
2769 Male, age 72, unknown 201.2
2823 Male, age 76, right hemisphere 195.1
2503 Female, age 72, unknown 161.0
2588 Male, age 74, left hemisphere 144.2
2725 Female, age 75, unknown 134.5
2584 Male, age 75, left hemisphere 132.5
Substantia nigra
nTPM: 115.2
1851 Male, age 51, unknown 139.7
2590 Female, age 75, unknown 130.8
2409 Female, age 72, unknown 127.1
2583 Male, age 75, right hemisphere 123.6
1889 Female, age 72, unknown 119.2
2241 Male, age 72, unknown 116.8
2699 Male, age 18, unknown 110.4
1941 Male, age 53, unknown 104.3
1916 Female, age 42, unknown 93.2
2665 Male, age 74, both hemispheres 87.0
Superior colliculus
nTPM: 127.2
1913 Female, age 42, unknown 198.2
1995 Male, age 72, unknown 195.9
2587 Male, age 74, left hemisphere 145.6
1895 Male, age 76, right hemisphere 134.3
1839 Male, age 51, unknown 130.8
2668 Female, age 75, unknown 114.5
1796 Male, age 53, unknown 99.0
2664 Male, age 75, both hemispheres 91.1
2087 Female, age 72, unknown 83.3
2261 Male, age 18, unknown 79.1
Ventral tegmental area
nTPM: 141.7
2223 Female, age 72, unknown 209.0
2410 Female, age 72, unknown 164.3
2021 Male, age 53, unknown 127.0
1942 Male, age 51, unknown 121.2
2218 Male, age 76, both hemispheres 118.8
1915 Female, age 42, unknown 109.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 120.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.2
Samples: 183

Max nTPM: 368.8
Min nTPM: 22.2
Std nTPM: 55.9
Median nTPM: 105.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 368.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 320.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 299.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 283.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 246.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 241.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 240.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 236.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 235.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 229.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 227.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 213.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.5
FF:10158-103A5 76 years, female 213.5

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 57.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 57.1
Samples: 1

Max nTPM: 57.1
Min nTPM: 57.1
Sample A 57.1
Midbrain
nTPM: 40.4
Samples: 1

Max nTPM: 40.4
Min nTPM: 40.4
Sample A 40.4
Superior colliculi
nTPM: 35.4
Samples: 1

Max nTPM: 35.4
Min nTPM: 35.4
Sample A 35.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 134.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 131.3
Samples: 3

Max nTPM: 164.0
Min nTPM: 112.9
Sample A Female 164.0
Sample B Female 117.1
Sample C Male 112.9
Midbrain
nTPM: 102.4
Samples: 3

Max nTPM: 146.6
Min nTPM: 79.9
Sample B Female 146.6
Sample C Male 79.9
Sample D Male 80.8
Periaqueductal gray
nTPM: 102.8
Samples: 3

Max nTPM: 123.7
Min nTPM: 77.9
Sample B Female 123.7
Sample C Male 77.9
Sample D Male 106.7
Superior colliculi
nTPM: 134.1
Samples: 4

Max nTPM: 156.0
Min nTPM: 101.3
Sample A Female 156.0
Sample B Female 101.3
Sample C Male 130.0
Sample D Male 148.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 92.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.4
Samples: 4

Max nTPM: 98.8
Min nTPM: 85.8
Sample A 87.8
Sample B 85.8
Sample C 98.8
Sample D 97.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 59.3
Rat sample Sample description nTPM
Midbrain
nTPM: 59.4
Samples: 4

Max nTPM: 66.2
Min nTPM: 52.5
Sample A 54.3
Sample A 64.4
Sample A 66.2
Sample A 52.5

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