We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ITPKB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ITPKB
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:64.1 nTPM
HPA Brain:247.5 nTPM
GTEx:64.1 nTPM
FANTOM5:197.4 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:10.7 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.5
Sample id Sample description nTPM
Amygdala
nTPM: 247.5
2695 Female, age 67, right hemisphere 480.9
2814 Male, age 76, right hemisphere 239.4
2517 Female, age 94, left hemisphere 196.6
1987 Female, age 91, left hemisphere 174.5
2514 Male, age 75, right hemisphere 146.2
Basal amygdala
nTPM: 201.4
2609 Male, age 75, right hemisphere 261.8
1955 Male, age 76, both hemispheres 219.2
2110 Male, age 80, left hemisphere 215.3
2827 Female, age 67, right hemisphere 177.0
2243 Female, age 91, right hemisphere 173.7
2685 Female, age 94, left hemisphere 161.4
Central amygdala
nTPM: 218.4
2515 Male, age 75, right hemisphere 267.2
1905 Male, age 76, both hemispheres 255.4
2826 Female, age 94, left hemisphere 209.6
2239 Male, age 80, left hemisphere 194.3
2701 Female, age 91, right hemisphere 165.6
Corticomedial amygdala
nTPM: 166.7
2428 Male, age 75, right hemisphere 209.5
2829 Male, age 80, left hemisphere 198.0
2240 Male, age 76, both hemispheres 180.8
2535 Female, age 67, right hemisphere 138.1
2429 Female, age 94, left hemisphere 137.0
2242 Female, age 91, right hemisphere 136.6
Lateral amygdala
nTPM: 209.7
2256 Male, age 80, left hemisphere 237.0
2516 Male, age 75, right hemisphere 230.9
2830 Female, age 67, right hemisphere 229.4
1883 Male, age 76, both hemispheres 228.1
2255 Female, age 91, right hemisphere 171.9
2534 Female, age 94, left hemisphere 160.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 64.1
Samples: 181

Max nTPM: 235.0
Min nTPM: 20.2
Std nTPM: 29.4
Median nTPM: 57.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 235.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 169.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 150.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 133.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 131.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 129.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 125.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 124.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 123.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 112.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 110.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 107.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 106.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 105.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 104.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 101.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 100.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 98.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 96.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 96.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 95.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 94.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 91.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 91.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 89.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 88.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 88.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 88.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 87.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 85.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 85.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 85.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 84.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 84.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 84.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 84.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 82.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 82.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 81.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 80.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 80.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 79.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 79.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 79.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 78.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 78.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 77.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 77.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 76.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 75.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 75.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 74.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 74.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 73.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 72.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 72.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 72.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 71.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 71.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 70.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 69.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 68.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 68.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 68.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 67.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 67.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 67.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 66.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 64.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 64.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 62.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 61.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 61.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 60.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 60.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 60.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 60.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 60.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 60.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 58.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 58.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 57.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 57.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 57.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 57.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 56.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 56.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 56.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 56.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 55.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 55.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 55.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 55.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 54.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 53.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 53.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 53.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 53.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 52.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 52.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 51.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 51.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 50.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 50.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 49.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 49.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 49.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 49.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 48.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 48.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 48.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 47.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 47.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 47.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 47.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 46.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 46.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 45.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 45.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 45.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 45.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 45.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 45.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 44.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 44.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 43.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 42.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 42.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 42.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 41.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 41.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 41.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 40.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 40.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 40.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 40.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 40.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 39.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 39.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 39.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 39.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 38.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 38.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 38.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 37.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 37.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 37.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 36.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 35.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 35.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 34.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 34.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 33.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 33.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 33.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 32.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 32.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 32.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 31.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 29.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 29.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 28.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 27.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 27.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 27.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 26.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 24.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 22.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 22.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 20.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

197.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 197.4
FF:10151-102I7 76 years, female 197.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.2
Pig sample Sample description nTPM
Amygdala
nTPM: 28.2
Samples: 4

Max nTPM: 32.9
Min nTPM: 24.3
Sample A Female 32.9
Sample B Female 24.3
Sample C Male 27.7
Sample D Male 28.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 10.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.7
Sample A Male 12.3
Sample B Male 9.7
Sample C Female 10.5
Sample D Female 10.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
69735640 Antisense, RP_050503_03_B11, Mouse strain C57BL/6J (56 days, male) 0.4
73520992 Antisense, RP_051101_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo