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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:60.8 nTPM
HPA Brain:261.3 nTPM
GTEx:60.8 nTPM
FANTOM5:518.6 Scaled Tags Per Million
Pig:67.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

261.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 231.6
2048 Male, age 55, midline 264.2
2565 Male, age 75, midline 247.1
1981 Female, age 72, midline 241.4
2194 Female, age 79, both hemispheres 208.8
2816 Male, age 47, midline 196.4
Cervical spinal cord, dorsal horn
nTPM: 190.4
2173 Female, age 72, unknown 260.7
2721 Male, age 90, both hemispheres 201.3
1877 Male, age 55, unknown 183.9
2296 Male, age 66, both hemispheres 183.9
2069 Male, age 47, both hemispheres 177.7
2297 Male, age 75, both hemispheres 134.8
Cervical spinal cord, ventral horn
nTPM: 261.3
2809 Male, age 90, both hemispheres 365.7
2098 Female, age 72, unknown 274.6
2295 Male, age 66, both hemispheres 241.0
2820 Female, age 79, both hemispheres 233.2
2480 Male, age 75, both hemispheres 230.8
2068 Male, age 55, unknown 222.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 60.8
Samples: 204

Max nTPM: 153.0
Min nTPM: 24.6
Std nTPM: 19.6
Median nTPM: 57.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 153.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 143.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 128.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 115.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 112.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 110.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 106.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 101.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 100.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 100.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 96.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 95.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 94.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 91.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 88.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 87.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 86.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 86.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 85.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 85.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 85.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 84.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 82.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 82.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 81.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 80.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 78.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 78.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 78.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 77.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 77.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 76.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 75.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 74.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 74.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 74.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 74.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 74.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 74.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 74.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 74.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 73.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 73.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 72.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 72.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 72.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 72.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 72.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 71.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 70.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 70.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 69.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 69.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 69.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 68.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 68.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 67.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 67.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 67.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 67.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 67.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 66.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 66.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 66.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 66.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 65.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 65.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 64.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 64.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 64.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 64.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 64.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 63.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 63.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 63.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 63.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 63.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 62.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 62.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 62.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 62.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 62.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 61.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 61.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 61.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 60.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 60.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 60.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 59.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 59.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 58.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 58.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 58.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 58.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 57.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 57.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 57.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 57.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 57.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 57.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 57.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 56.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 56.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 56.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 56.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 56.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 56.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 56.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 56.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 55.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 55.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 55.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 55.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 55.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 55.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 55.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 54.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 54.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 54.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 54.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 54.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 53.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 53.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 53.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 53.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 52.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 51.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 51.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 51.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 51.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 51.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 50.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 50.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 50.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 50.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 50.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 50.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 50.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 50.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 50.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 49.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 49.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 49.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 49.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 48.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 48.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 48.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 48.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 47.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 47.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 47.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 47.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 47.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 47.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 47.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 46.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 46.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 46.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 44.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 44.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 43.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 43.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 43.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 43.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 42.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 42.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 42.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 41.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 41.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 41.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 41.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 40.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 40.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 40.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 40.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 39.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 39.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 39.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 39.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 38.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 38.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 37.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 37.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 36.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 36.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 36.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 36.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 35.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 35.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 35.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 34.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 34.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 34.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 33.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 33.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 33.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 32.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 32.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 24.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

518.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 518.6
FF:10159-103A6 76 years, female 524.8
FF:10181-103D1 60 years, female 512.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.7
Samples: 4

Max nTPM: 60.8
Min nTPM: 51.6
Sample A Female 52.7
Sample B Female 53.8
Sample C Male 60.8
Sample D Male 51.6
Ventral spinal cord
nTPM: 67.2
Samples: 4

Max nTPM: 73.6
Min nTPM: 64.1
Sample A Female 73.6
Sample B Female 65.6
Sample C Male 64.1
Sample D Male 65.6

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