BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:42.5 nTPM
HPA Brain:77.8 nTPM
GTEx:42.5 nTPM
FANTOM5:112.3 Scaled Tags Per Million
Pig:37.4 nTPM
Mouse:28.3 nTPM
Allen mouse:1.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

CAUDATE - Antibody stainingi
Antibody HPA045168Antibody CAB000147Antibody CAB003839Antibody CAB003840Antibody CAB075726Antibody CAB075727
Glial cells HighNot detectedNot detectedNot detectedHighHigh
Neuronal cells MediumNot detectedNot detectedHighHighHigh












BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 77.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.3
2481 Female, age 94, left hemisphere 81.8
2288 Male, age 75, left hemisphere 62.2
2290 Female, age 72, unknown 57.6
1857 Female, age 85, left hemisphere 55.0
2846 Female, age 79, unknown 54.0
2289 Male, age 61, right hemisphere 48.7
1854 Male, age 80, left hemisphere 47.7
1781 Male, age 74, unknown 43.5
Globus pallidus, externus
nTPM: 74.4
1996 Male, age 80, right hemisphere 92.4
2772 Female, age 79, unknown 85.5
2646 Male, age 61, right hemisphere 72.7
2395 Male, age 75, both hemispheres 71.9
2567 Female, age 72, unknown 49.3
Globus pallidus, internus
nTPM: 77.8
2287 Male, age 75, right hemisphere 98.3
2778 Female, age 91, both hemispheres 88.9
2111 Female, age 85, right hemisphere 84.5
2483 Female, age 94, right hemisphere 75.1
1818 Male, age 74, unknown 72.5
2037 Male, age 80, right hemisphere 70.6
2566 Female, age 72, unknown 54.7
Nucleus accumbens
nTPM: 51.5
2391 Female, age 94, left hemisphere 71.8
2286 Male, age 75, left hemisphere 64.5
2698 Female, age 72, unknown 54.8
1806 Female, age 85, left hemisphere 50.9
1783 Male, age 74, unknown 48.1
2732 Male, age 80, right hemisphere 44.9
1856 Female, age 91, right hemisphere 39.1
2824 Male, age 61, right hemisphere 38.0
Nucleus basalis of Meynert
nTPM: 54.3
2569 Male, age 61, both hemispheres 66.4
2821 Male, age 75, both hemispheres 54.4
2484 Female, age 94, left hemisphere 51.8
2393 Male, age 80, right hemisphere 44.6
Nucleus of the diagonal band
nTPM: 46.3
1812 Female, age 91, both hemispheres 55.3
2775 Male, age 80, right hemisphere 49.3
2195 Female, age 85, both hemispheres 46.1
2029 Male, age 61, right hemisphere 40.5
1979 Male, age 74, unknown 40.3
Putamen
nTPM: 51.4
2482 Female, age 94, left hemisphere 69.7
1829 Male, age 74, unknown 55.7
2466 Female, age 79, unknown 52.0
2489 Female, age 72, unknown 49.1
2647 Male, age 75, left hemisphere 46.8
1937 Female, age 91, right hemisphere 45.4
1838 Male, age 80, right hemisphere 40.8
Septal nuclei
nTPM: 46.1
2031 Female, age 72, unknown 48.7
1960 Male, age 74, unknown 48.2
2059 Female, age 85, both hemispheres 47.9
2199 Male, age 80, right hemisphere 46.0
2629 Female, age 94, right hemisphere 45.5
2394 Male, age 61, left hemisphere 44.6
2009 Female, age 91, both hemispheres 41.5
Stria terminalis, bed nucleus
nTPM: 40.4
1974 Female, age 91, both hemispheres 46.6
2486 Female, age 94, both hemispheres 38.5
2201 Male, age 74, unknown 36.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 42.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.5
Samples: 300

Max nTPM: 73.5
Min nTPM: 20.2
Std nTPM: 8.8
Median nTPM: 41.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 73.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 69.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 68.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 67.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 67.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 64.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 64.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 62.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 62.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 62.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 61.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.3
Samples: 285

Max nTPM: 69.7
Min nTPM: 2.3
Std nTPM: 9.2
Median nTPM: 35.6
GTEX-1JN1M-0011-R6b-SM-G9EQ7 60-69 years, female 69.7
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 59.5
GTEX-15SHU-0011-R6a-SM-GPRXC 40-49 years, female 57.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 57.1
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 56.3
GTEX-1MCQQ-0011-R6b-SM-F3425 60-69 years, male 55.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 53.5
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 52.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 51.9
GTEX-1KWVE-0011-R6b-SM-G8ON2 30-39 years, male 51.7
GTEX-13OW7-0011-R6a-SM-GJ3Q7 50-59 years, male 51.2
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Brain - Putamen (basal ganglia)
Average nTPM: 42.1
Samples: 254

Max nTPM: 79.6
Min nTPM: 19.6
Std nTPM: 9.9
Median nTPM: 42.2
GTEX-1NV8Z-0011-R7a-SM-F3K4J 60-69 years, male 79.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 70.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 66.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 66.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 65.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 64.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 64.5
GTEX-1KWVE-0011-R7b-SM-F6486 30-39 years, male 62.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 62.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 61.4
GTEX-15SHU-0011-R7a-SM-GQ1DL 40-49 years, female 59.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 112.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.5
FF:10164-103B2 76 years, female 91.5
Nucleus accumbens
Scaled Tags Per Million: 103.3
FF:10037-101F1 23-56 years, mixed 103.3
Putamen
Scaled Tags Per Million: 90.1
FF:10176-103C5 60 years, female 90.1
Globus pallidus
Scaled Tags Per Million: 112.3
FF:10161-103A8 76 years, female 134.4
FF:10175-103C4 60 years, female 90.2

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 37.4
Pig sample Sample description nTPM
Caudate
nTPM: 33.5
Samples: 4

Max nTPM: 40.0
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 34.1
Sample C Male 40.0
Sample D Male 31.4
Putamen
nTPM: 37.4
Samples: 4

Max nTPM: 43.3
Min nTPM: 30.9
Sample A Female 36.9
Sample B Female 30.9
Sample C Male 43.3
Sample D Male 38.4
Septum
nTPM: 33.0
Samples: 4

Max nTPM: 35.5
Min nTPM: 30.1
Sample A Female 32.9
Sample B Female 30.1
Sample C Male 33.6
Sample D Male 35.5
Ventral pallidum
nTPM: 34.8
Samples: 4

Max nTPM: 40.8
Min nTPM: 28.8
Sample A Female 28.8
Sample B Female 34.4
Sample C Male 40.8
Sample D Male 35.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 28.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 28.3
Samples: 4

Max nTPM: 29.1
Min nTPM: 27.4
Sample A Male 29.1
Sample B Male 27.7
Sample C Female 27.4
Sample D Female 28.8
Septum
nTPM: 25.3
Samples: 4

Max nTPM: 26.1
Min nTPM: 23.3
Sample A Male 25.9
Sample B Male 23.3
Sample C Female 26.1
Sample D Female 26.0
Ventral forebrain
nTPM: 28.3
Samples: 4

Max nTPM: 31.5
Min nTPM: 24.9
Sample A Male 31.1
Sample B Male 25.5
Sample C Female 24.9
Sample D Female 31.5

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
70429154 Antisense, RP_050614_01_B02, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 1.0
70429154 Antisense, RP_050614_01_B02, Mouse strain C57BL/6J (56 days, male) 1.0

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