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PARP1
HPA
RESOURCES
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  • BRAIN
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Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PARP1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
ISOLATED
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PARP1
Synonyms ADPRT, ARTD1, PARP, PARS, Poly-PARP, PPOL
Gene descriptioni

Full gene name according to HGNC.

Poly(ADP-ribose) polymerase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Enzymes
FDA approved drug targets
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Cytotrophoblasts - Basic cellular functions (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Cytotrophoblasts, Migrating cytotrophoblasts)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Lymphoid tissue - Immune response (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Nucleoplasm In addition localized to the Nucleoli, Nucleoli fibrillar center, Nuclear bodies
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q42.12
Chromosome location (bp) 226360210 - 226408154
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000143799 (version 109)
Entrez gene 142
HGNC HGNC:270
UniProt P09874
GeneCards PARP1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Lymphoid tissue - Immune response

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
Show surface:
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Autorotate:
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PAE plot
Number of interactions: 80
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
APLF571100
APTX35530
ARID4B812198
BANF15323130
BAZ1A5217132
CASP35163121
CBX1292663792
CBX31825117132
CBX5295988924
CBX822783655
CEBPA4712700
CETN27814218
CHD1L121710
CHD4133188170
CHD7221230
CHFR451910
CORO1B461032
CORO1C3129416
DNMT111136010
E2F110207500
ERG677000
H1-04426190
H2AC21135241156
H2AC6111150
HMGA11921671091
HMGB114216101
HNRNPD238106410
IL2444400
IMPDH2272722
IVNS1ABP231312
JUN2750108134
KAT78929132
KIF22409130
KPNA3153333283
LIG3632397
MACROD125602
MACROH2A151159120
MCM4127441215
MECP28349790
MSH2785563
MTA214684179
MYO1E2213210
NCKAP121929350
NSD274351417
NUMA1217611500
NUP18830732
PARP2141140
PHF1011019220
PIAS46353606
PNKP5351521
POGZ75826120
POLB541292
PRKDC1113143171
PRPS23101050
PSIP1322660
RECQL331311
RFC2642180
RFC5102230126
RNF146253310
RNF2323395813
RPL7L111219740
RRM1221010
RSF14319120
SMARCA17518260
SMARCC2221091170
SRBD110430
SSRP161910733328
SUPT16H175733124
TFCP25451810
TOP14961012591
TOP2A204771340
TP5312316670450
UHRF1435446
WRN12153002
XPC843378
XRCC110103283
XRCC51418135132
XRCC62123231152
YBX121311221236
ZNF5122112848
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 28 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
APLF571100
APTX35530
CASP35163121
CEBPA4712700
CGAS031400
DNMT111136010
E2F110207500
EP4006738100
ERG677000
HCN1114200
HMGB114216101
IL2444400
MACROD125602
NFIC91011610
OARD103000
PIAS46353606
RECQL331311
RNF146253310
SNAI19295700
TIMELESS221210
TP5312316670450
UBC355946340
USF12131900
WRN12153002
XRCC110103283
XRCC51418135132
XRCC62123231152
YARS1011800
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 281
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AATF161437435
AGR236422702
AIMP29336002
ANLN1056820
ANP32E3256011
APLF571100
APTX35530
ARAF191665114
ARID4B812198
ATAD2121040
ATM13209903
ATR264410
BAG31657128015
BANF15323130
BAP19711706
BAZ1A5217132
BLM121565100
BRCA1363931130
BRD3018500
BRD44649002
BRD7111442150
BUB1B131237120
BUB3463120
CASP35163121
CASP73101701
CBX1292663792
CBX2382362
CBX31825117132
CBX5295988924
CBX822783655
CCNF4462401
CD274254904
CDK229261411024
CDK814654100
CDKN1A295093019
CDYL2111200
CEBPA4712700
CETN27814218
CHD1L121710
CHD4133188170
CHD7221230
CHERP917221328
CHFR451910
CIZ133920
CMTR1001209
CORO1B461032
CORO1C3129416
CREBBP213619940
CSE1L684340
CTCF5378610550
CTNNB147852851313
CTR99734158
CUL3404577120
DNAJC951218120
DNMT111136010
DTX210952301
E2F110207500
E4F112903
EFTUD254151814630
EGFR18727545806
EMG1121036
EP300273437241
ERBB2325012000
ERCC6026200
ERG677000
ESR1345947900
EWSR113259460
FAF1576005
FOXO111103060
GAPDH92997121
GSK3B273018680
GTF2F11053672
GTF3C2131800
GTF3C324222011
H1-04426190
H1-2759460
H1-57645313
H2AC21135241156
H2AC46289710
H2AC6111150
H2AX2230128039
H2AZ119789028
H2BC81914600
H3-3A102613705
H3C12653300014
H3C152284101
H3C6175339014
H4C1325635605
HDAC1104653757642
HDAC268192278812
HDAC3121910470
HDGF002430
HECTD31113025
HELLS222710
HES1211601
HIF1A283613900
HIPK2783700
HMGA11921671091
HMGA2112100
HMGB114216101
HMGN4315053
HNRNPD238106410
HOXB725601
HPF101600
HRNR00703
HSPA1A1731800
HSPA294037641
HUWE15520920
IKBKG44629850
IL2444400
IMMT8116520
IMPDH2272722
INTS171221024
IPO4573230
IVNS1ABP231312
JUN2750108134
JUP7155420
KAT78929132
KIF18B11920
KIF22409130
KIFC100901
KLF5063200
KLF811800
KPNA3153333283
LARP74251182733
LAS1L3023250
LIG3632397
LMNA1754239323
MACROD125602
MACROH2A151159120
MAFG55801
MCM4127441215
MECOM345820
MECP28349790
MED14388544312
MED2320651170
MED6297462710
MKRN2192411
MORC2011301
MOV1010978521
MSH2785563
MTA214684179
MTA3023200
MYBL2422171
MYC6690126920
MYO1E2213210
NAT109240235
NCAPD23312217
NCAPG2312110
NCKAP121929350
NCL38161843824
NCOA6784800
NEDD89226702
NFATC1272400
NFKB122256980
NIPSNAP2352603
NKX2-1011300
NPM1112303472080
NSD274351417
NUMA1217611500
NUP18830732
NVL00760
OVOL201609
PAF1111037129
PAICS291860
PARP2141140
PARP303200
PARP911300
PCNA34371501014
PDS5A7724312
PHB12713010
PHF1011019220
PIAS18386640
PIAS46353606
PNKP5351521
POGZ75826120
POLA1002212
POLA206911
POLB541292
POLE6416314
POU2F1143400
PPM1G17437437
PRKDC1113143171
PRKN1111140500
PRMT1193614200
PRPF31111185700
PRPS23101050
PSIP1322660
RAD186124513
RAD503551100
RB1323614721
RBM14181258990
RECQL331311
RELA3658174130
REST242500
RFC1454100
RFC2642180
RFC5102230126
RNF144A111806
RNF146253310
RNF2323395813
RNF410807104
RPA171042011
RPA2111537620
RPA35631411
RPL355238145162
RPL7L111219740
RPS3A375130052
RRM1221010
RRP1B51130130
RSF14319120
S100A45131101
S100A64121100
SENP39831159
SIRT13448126017
SIRT2171400
SIRT68454032
SKA3211224
SLC3A2844150
SMARCA17518260
SMARCAD1202520
SMARCC2221091170
SMURF29125904
SND1643481
SP1172511410
SQSTM1324031220
SRBD110430
SSRP161910733328
STAU13213371390
STIP1132192166
STK42317947247
STUB12657192020
SUB11217380
SUMO2141810700
SUPT16H175733124
SUPT5H37868910
SURF415840
TCF7L2473600
TERF2IP126729710
TFCP25451810
THRA182500
TOP14961012591
TOP2A204771340
TOP2B123900
TOPBP1445100
TP5312316670450
TP53BP111706820
TRIM296132600
TRIP124332418
UBE2I314017205
UHRF1435446
UHRF2662900
UIMC1332300
USP1412753
USP11579502
USP14817690
USP155108530
USP36115110
USP5133400
USP72828212711
VCP5756348435
VIRMA82212112
VRK151223117
WDR36002500
WDR76306232
WRN12153002
WRNIP1361900
WWP2185214011
XPC843378
XRCC110103283
XRCC51418135132
XRCC62123231152
YAP13132304100
YBX121311221236
ZBTB9129304
ZEB1212250
ZNF2412302208
ZNF36501200
ZNF38400320
ZNF42314521
ZNF5122112848
Show allShow less
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 158
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACTL6A221958240
ANAPC78530130
ANP32B3101670
APOBEC3C4104617
APTX35530
ARID4B812198
ATF38172520
BANF15323130
BAZ1A5217132
BAZ1B4534130
BCL7C113230
BPTF322240
CAPZB10061336660
CBX1292663792
CBX31825117132
CBX5295988924
CBX822783655
CECR221240
CETN27814218
CHD1L121710
CHD4133188170
CHD7221230
CHEK17105271
CHFR451910
CHRAC1324111
CKAP492651225
CLPB241840
CORO1B461032
CORO1C3129416
CSNK2A256814923222
CTTN14564710
DLX500010
DNM18111940
DNM29272180
DNTTIP14118102
DPF2111036154
DR16471354
EEA1571560
EP4006738100
EPN1361770
EPN211870
FEN1551591
GAK5312911
GATAD2A7542100
GLO101320
GLUD13319211
GRB28216620635
H1-04426190
H1-3132184
H2AC21135241156
H2AC6111150
H2BC54244254
H3C13028291
H4C1685621195
HIP14481161
HLTF331710
HMG20A115327117
HMGA11921671091
HMGB2101124660
HMGN51021131
HNRNPD238106410
HOXA1100120
HOXA1300020
HOXB9243810
HP1BP34329190
IMPDH100310
IMPDH2272722
IVNS1ABP231312
JUN2750108134
KAT78929132
KIF22409130
KPNA3153333283
LBR77262122
LIG3632397
MACROH2A151159120
MACROH2A2119155
MAP4K47429180
MBD16121110
MBD381452110
MCM240481081021
MCM36194353
MCM4127441215
MCM55194912
MCM61617421115
MCM71526721124
MEAF63102760
MECP28349790
MSH2785563
MSH66342163
MSL1211241
MTA214684179
MYO1E2213210
NCALD321325
NCK1233261164
NCKAP121929350
NECAP1102300
NFIC91011610
NR2F212911
NSD274351417
NUCKS17014970
NUMA1217611500
NUP18830732
PARP2141140
PHF1011019220
PHF14119160
PICALM3224160
PIP5K1B00010
PKNOX1512720
PNKP5351521
POGZ75826120
POLB541292
PRKDC1113143171
PRPF4B245367324
PRPS23101050
PRPSAP135510
PRPSAP222574
PSIP1322660
RECQL331311
RFC2642180
RFC35720415
RFC49629155
RFC5102230126
RNF146253310
RNF2323395813
RPL7L111219740
RRM1221010
RSF14319120
RUVBL2671114210333
SAP3016838619
SHPRH121130
SIN3A1411107512
SLC7A6111208
SMARCA17518260
SMARCA43421139362
SMARCA5151876277
SMARCB1213384270
SMARCC2221091170
SRBD110430
SSRP161910733328
STAM212321891
SUPT16H175733124
TDP158572
TFAM383450
TFAP2A372541
TFCP25451810
TMX1410141310
TOP14961012591
TOP2A204771340
TPX2181230
UHRF1435446
VPS72952389
XPC843378
XRCC110103283
XRCC51418135132
XRCC62123231152
YBX121311221236
ZFP64214310
ZNF5122112848
Show allShow less
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 1
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
MACROD125602
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene PARP1 is associated with 1 reactions in 1 different subsystems, and present in the compartments: Cytosol. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Isolated Cytosol, Mitochondria, Peroxisome, Endoplasmic reticulum, Extracellular, Nucleus, Golgi apparatus 524 320 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PARP1-203 P09874
A0A024R3T8
Enzymes
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
FDA approved drug targets
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
1014 aa
113.1 kDa
No 0
PARP1-216 A0A7I2V3E1
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
971 aa
108.2 kDa
No 0

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