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SIRT1
HPA
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Tissue
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Annotation
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Category
Tau score
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Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
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Category
Tau score
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Tau score
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Category
Tau score
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Tau score
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Tau score
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Cancer
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Variants
Interacting gene (ensg_id)
Type
Number of interactions
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ipTM
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SIRT1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
HISTIDINE METABOLISM
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SIRT1
Synonyms SIR2L1
Gene descriptioni

Full gene name according to HGNC.

Sirtuin 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Early spermatids - Spermiogenesis: Acrosomal phase (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Early spermatids)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Transcription (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Nucleoplasm In addition localized to the Nucleoli fibrillar center, Mitochondria, Cytosol
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 10
Cytoband q21.3
Chromosome location (bp) 67884656 - 67918390
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000096717 (version 109)
Entrez gene 23411
HGNC HGNC:14929
UniProt Q96EB6
GeneCards SIRT1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Transcription

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 34
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACACA462700
AKT15314319724
APEX1247110
ATG7681750
CCAR2684030
CDKL110203
CSNK2A1996724918422
CSNK2B583111915437
DNMT111136010
E2F110207500
EP300273437241
FOXO111103060
FOXO310203040
HES1211601
HEY2318505
IRS2882000
KAT2B111211551
MTOR2121781317
MYC6690126920
MYCN6103300
NBN10125610
NMNAT12125111
NR0B2582502
PITX15521201
PPARG7137900
RARA15286100
RPS19BP1191020
SETD77172100
SNW148891291925
SUV39H132525328
TLE112164018
TP5312316670450
TP7310115500
WRN12153002
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 48 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACACA462700
AKT15314319724
APEX1247110
ATG7681750
CCAR2684030
CIITA031000
CREBZF312400
CSAG301000
CSNK2A1996724918422
CSNK2B583111915437
DNMT111136010
DVL391202102
E2F110207500
EP300273437241
FOXO111103060
FOXO310203040
FOXO4041000
HES1211601
HEY2318505
HOXB5049001
IRS2882000
KAT2B111211551
KMT2A14246670
MAP1LC3B31578360
MTOR2121781317
MYC6690126920
MYCN6103300
NBN10125610
NMNAT12125111
NR0B2582502
PPARG7137900
RARA15286100
RELA3658174130
RPS19BP1191020
RPTOR151551516
RRP8459461
SETD77172100
SNW148891291925
SUV39H132525328
TLE112164018
TP5312316670450
TP7310115500
WRN12153002
XPA4171424
XRCC62123231152
ZBTB3803401
ZNF138017000
ZNF79301000
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 126
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ACACA462700
AFP01500
AKT15314319724
APEX1247110
AR344225400
ATG7681750
ATP2A2244200
BAZ1B4534130
BCL11A202620
BCL63403800
BMAL1221600
BRD44649002
BRINP111400
CCAR2684030
CCNB11086976
CDK1121913160
CDK229261411024
CDKL110203
CENATAC16601
CHEK215195010
CHFR451910
CLOCK421805
CSNK2A1996724918422
CSNK2B583111915437
CTTN14564710
CUL4B61116940
DDB13922173649
DNMT111136010
DOT1L342500
E2F110207500
ECT2365530
EED12126660
EP300273437241
EPAS14102900
ESR1345947900
ESRRA371200
EZH2161623670
FGF1104500
FOS94849016
FOXM1273000
FOXO111103060
FOXO310203040
FZR111710450
GAPDH92997121
HDAC1104653757642
HDAC268192278812
HDAC410225520
HES1211601
HEY2318505
HIC1451300
HIF1A283613900
HIPK2783700
HMGB114216101
HNF1A001300
HNF4A353000
HOXB9243810
HSP90AA15157369230
IMMP2L002000
IRS1694300
IRS2882000
JUN2750108134
KAT2A1066070
KAT2B111211551
KAT5171808830
KAT8232810
LMNA1754239323
MAPK810126540
MAPT111918800
MBD381452110
MDM2476126100
MFN111730
MPHOSPH8313931
MTA113236808
MTA214684179
MTOR2121781317
MYC6690126920
MYCN6103300
NBN10125610
NCOR113189430
NDN6133800
NMNAT12125111
NPM1112303472080
NR0B2582502
NR1H413900
PARP180282811581
PITX15521201
PLD10102000
PML121515950
PPARA4181600
PPARG7137900
PPARGC1A572400
PRMT1193614200
PSME3343572430
RARA15286100
RBBP44136145400
RBBP73517112735
RECQL45193023
RICTOR1167690
RPA171042011
RPS19BP1191020
SAP3016838619
SATB1253000
SETD77172100
SMAD7574600
SMURF29125904
SNW148891291925
SP11000700
SREBF1023200
STAT3255910700
STK1114173437
SUV39H132525328
SUZ128679104
TAL1462300
TLE112164018
TOPBP1445100
TP5312316670450
TP7310115500
TRIM28109243466894
TULP39153727
USP2216242240
USP72828212711
VDR7124200
WDR76306232
WRN12153002
ZEB1212250
ZYX10142651
Show allShow less
SIRT1 has no defined protein interactions in OpenCell.
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 17
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CDKL110203
CWC15102141014
DNAJC1401102
H2AZ119789028
HOXA504402
HOXB5049001
IMPA111212
MAPKAPK25420221
PITX15521201
RPL7A51611731137
RPL91828813112
RPP21111016
RPS250812050120
SOST24209
TADA2B131241410
TNP207106
ZBTB3803401
Show allShow less
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene SIRT1 is associated with 3 reactions in 1 different subsystems, and present in the compartments: Cytosol. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Histidine metabolism Cytosol, Mitochondria 56 41 3
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SIRT1-201 Q96EB6
A0A024QZQ1
Enzymes
Metabolic proteins
Predicted intracellular proteins
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
747 aa
81.7 kDa
No 0
SIRT1-202 B0QZ35
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
444 aa
49.2 kDa
No 0
SIRT1-203 B0QZ35
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
444 aa
49.2 kDa
No 0
SIRT1-204 E9PC49
Metabolic proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
452 aa
50.5 kDa
No 0

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