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CREBBP
HPA
RESOURCES
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Annotation
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Brain region
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Tau score
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Interacting gene (ensg_id)
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ipTM
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CREBBP
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
ISOLATED
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CREBBP
Synonyms CBP, KAT3A, RSTS, RTS
Gene descriptioni

Full gene name according to HGNC.

CREB binding protein
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Neutrophils - Innate immunity signal integration (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Neutrophils)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Transcription (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Nucleoplasm, Nuclear bodies
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband p13.3
Chromosome location (bp) 3725054 - 3880713
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000005339 (version 109)
Entrez gene 1387
HGNC HGNC:2348
UniProt Q92793
GeneCards CREBBP
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Transcription

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 21
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AKT15314319724
AR344225400
CREB15153400
CSNK2A1996724918422
CSNK2A256814923222
CTNNB147852851313
DAXX37798800
FOXO111103060
FOXO310203040
H4C1325635605
HIF1A283613900
HTT366665600
IRF36122905
IRF5351700
KAT2B111211551
MYB171800
NCOA111155620
NCOA6784800
RELA3658174130
SREBF24612014
TP5312316670450
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 36 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AKT15314319724
AR344225400
CREB15153400
CTNNB147852851313
DAXX37798800
FOXO111103060
FOXO310203040
GATA25251600
H4C1325635605
H4C11056105
H4C12156205
H4C13256305
H4C14456605
H4C15056105
H4C1685621195
H4C2156305
H4C3356505
H4C4056105
H4C5056005
H4C6356505
H4C8056105
H4C97561505
HIF1A283613900
HTT366665600
IFNAR258800
IRF36122905
IRF5351700
KAT2B111211551
MYB171800
NAP1L11312501118
NCOA111155620
NCOA6784800
RELA3658174130
SREBF24612014
TBX2104000
TP5312316670450
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 199
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AFP01500
AIRE3121800
AKT15314319724
ANAPC510126921
ANAPC78530130
AR344225400
ATF105400
ATF2152838110
ATF38172520
ATF416352600
ATXN1532727420
ATXN33746410
BRCA1363931130
C3orf62010202
CARM16104430
CCAR2684030
CDC201897899
CDC27191655177
CDH110365527
CDH2431850
CDK229261411024
CDK814654100
CDKN1A295093019
CEBPA4712700
CHUK131967714
CITED114300
CPSF424930
CREB15153400
CSNK2A1996724918422
CSNK2A256814923222
CTBP1262297124
CTNNB147852851313
CUX1211540
DAXX37798800
DDX17182066190
DUX4333900
DYRK1A303014240
DYRK1B6103500
E2F110207500
E2F3231301
EBF104200
EGR1121300
EID122800
EID345605
EP300273437241
EPAS14102900
ESR1345947900
ETS12121000
ETS2491100
EWSR113259460
FGFR112136800
FOS94849016
FOXM1273000
FOXO111103060
FOXO310203040
FOXO4041000
GATA34131700
GCM112600
GLI3221210
GTF2B113421180
H2BC3005200
H3-462210900
H3C12653300014
H4C1325635605
HBP1001100
HDAC1104653757642
HDAC268192278812
HDAC3121910470
HIF1A283613900
HLF04200
HMGA11921671091
HNF1A001300
HNF4A353000
HNRNPL334118701
HOXB615257
HOXB725601
HSF110257930
HTT366665600
IKBKB15238166
IKBKG44629850
IQGAP110217582
IRF36122905
IRF5351700
JUN2750108134
KAT2B111211551
KAT6A2126150
KDM2A111410
KDM2B222600
KHDRBS1172265150
KLF1114600
KLF1302201
KLF152302205
KLF4292000
KLF5063200
KLF811800
KMT2A14246670
KMT2D343200
KPNA2313785437
LATS18138010
MAPK11934123512
MAPK3111768212
MARK28746100
MDC1777300
MDM2476126100
MECOM345820
MED2320651170
MED25142228210
MLH127565104
MOB1A6203211
MTDH7232221
MYB171800
MYBL110601
MYBL2422171
MYC6690126920
MYOD1063300
NCOA111155620
NCOA2453010
NCOA3795310
NCOA6784800
NCOR113189430
NEUROG114302
NFATC1272400
NFATC2121900
NFATC401300
NFE206301
NFE2L238466900
NFIA163210300
NFIB12258400
NFIC91011610
NFIX1215600
NKX2-1011300
NLK1111901
NR3C141010431
NUP988236100
ONECUT100300
PARP180282811581
PAX62791700
PCNA34371501014
PIAS3272000
PML121515950
POLR2A100186110
POU1F109500
POU2F300100
PPARG7137900
PPARGC1A572400
PRKCZ10147407
PRLR02600
PTMA2318150
PTOV1001119
PYCR1411769
PYGO2121000
RAD23A9423715
RARA15286100
RBBP44136145400
RBBP51295870
REL121442555
RELA3658174130
RPS6KA1482810
SERTAD11201002
SETD1A432603
SLX411127700
SMAD19143800
SMAD217236900
SMAD3285212802
SMAD4227471016
SMARCA2886720
SMARCA43421139362
SMARCB1213384270
SNAI19295700
SNAI2051200
SP1172511410
SRC295713400
SRCAP201890
SREBF1023200
SREBF24612014
SRF352500
SS18L1261320
STAT113206000
STAT2461303
STAT3255910700
STAT6031400
SUMO1266155130
TCF3453900
TDG2131600
TFDP116733114
TGS1431178
TLE3113900
TP5312316670450
TP7310115500
TRERF132810
TRIM24635280
TRIM253319000
UBE2I314017205
USP14817690
VDR7124200
XAF14141200
XRCC62123231152
YY1194787176
ZNF10600301
Show allShow less
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 4
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CSNK2A1996724918422
CSNK2A256814923222
CSNK2B583111915437
CTBP2272164230
CREBBP has no defined protein interactions in BioPlex.
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene CREBBP is associated with 1 reactions in 1 different subsystems, and present in the compartments: Cytosol. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Isolated Cytosol, Mitochondria, Peroxisome, Endoplasmic reticulum, Extracellular, Nucleus, Golgi apparatus 524 320 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CREBBP-201 Q92793
Enzymes
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
2442 aa
265.4 kDa
No 0
CREBBP-202 Q92793
Enzymes
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
2404 aa
261 kDa
No 0
CREBBP-203 I3L466
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
1105 aa
122.4 kDa
No 0
CREBBP-205 I3L293
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
181 aa
19 kDa
No 0
CREBBP-206 I3L0Q1
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
254 aa
27.2 kDa
No 0
CREBBP-208 I3L3I5
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
196 aa
22.5 kDa
No 0
CREBBP-219 A0A1B0GUU0
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
33 aa
3.8 kDa
No 0
Show allShow less

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