BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:153.6 nTPM
HPA Brain:201.6 nTPM
GTEx:153.6 nTPM
FANTOM5:172.2 Scaled Tags Per Million
Mouse:28.8 nTPM
Rat:9.9 nTPM
Pig:170.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 201.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 184.2
2586 Male, age 75, left hemisphere 274.2
2019 Male, age 18, unknown 226.4
2828 Female, age 72, unknown 204.2
2411 Female, age 72, unknown 174.4
2666 Male, age 74, left hemisphere 172.5
1827 Male, age 72, unknown 169.5
1833 Male, age 53, unknown 166.8
1870 Female, age 42, unknown 155.1
1830 Male, age 51, unknown 154.1
2219 Male, age 76, both hemispheres 144.8
Dorsal raphe nucleus
nTPM: 201.6
2298 Female, age 72, unknown 219.2
1828 Male, age 53, unknown 198.7
2750 Male, age 76, both hemispheres 198.3
2047 Male, age 72, unknown 196.2
2016 Female, age 72, unknown 195.8
Inferior colliculus
nTPM: 170.9
1890 Male, age 53, unknown 198.7
2097 Female, age 72, unknown 171.3
1848 Female, age 42, unknown 158.1
2849 Male, age 72, unknown 155.6
Median raphe nucleus
nTPM: 148.1
2220 Male, age 76, midline 148.1
Periaquaductal grey, anterior
nTPM: 179.8
1795 Male, age 51, unknown 200.9
2502 Female, age 75, unknown 169.6
1947 Male, age 18, unknown 168.8
Periaquaductal grey, dorsal
nTPM: 180.6
2850 Male, age 76, both hemispheres 210.4
2464 Female, age 72, unknown 171.9
1840 Male, age 53, unknown 171.0
1831 Male, age 72, unknown 169.2
Periaquaductal grey, lateral
nTPM: 173.7
2140 Male, age 76, both hemispheres 183.3
2272 Male, age 74, both hemispheres 176.0
2053 Male, age 18, unknown 161.7
Pretectal area
nTPM: 200.1
1817 Female, age 42, unknown 254.8
1944 Female, age 72, unknown 238.9
2667 Female, age 75, unknown 235.9
1816 Male, age 51, unknown 234.5
2007 Male, age 72, unknown 222.1
1815 Male, age 53, unknown 209.4
2273 Male, age 74, both hemispheres 196.4
2224 Female, age 72, unknown 168.5
2407 Male, age 75, both hemispheres 149.8
2825 Male, age 18, unknown 146.3
2316 Male, age 76, right hemisphere 144.6
Red nucleus
nTPM: 189.6
2785 Male, age 18, unknown 223.9
2823 Male, age 76, right hemisphere 205.4
1821 Female, age 72, unknown 198.4
2503 Female, age 72, unknown 198.4
1904 Male, age 53, unknown 196.5
2725 Female, age 75, unknown 191.4
2769 Male, age 72, unknown 190.7
2227 Male, age 72, unknown 187.0
1954 Female, age 42, unknown 182.7
1865 Male, age 51, unknown 179.9
2588 Male, age 74, left hemisphere 167.0
2584 Male, age 75, left hemisphere 153.7
Substantia nigra
nTPM: 192.3
1851 Male, age 51, unknown 220.0
1889 Female, age 72, unknown 215.1
1916 Female, age 42, unknown 204.3
2409 Female, age 72, unknown 200.4
2665 Male, age 74, both hemispheres 197.2
2699 Male, age 18, unknown 187.4
1941 Male, age 53, unknown 184.7
2583 Male, age 75, right hemisphere 183.0
2241 Male, age 72, unknown 168.3
2590 Female, age 75, unknown 162.5
Superior colliculus
nTPM: 187.6
1995 Male, age 72, unknown 237.4
2087 Female, age 72, unknown 202.9
1913 Female, age 42, unknown 200.7
2664 Male, age 75, both hemispheres 197.4
2261 Male, age 18, unknown 195.0
2668 Female, age 75, unknown 189.5
1796 Male, age 53, unknown 188.8
1895 Male, age 76, right hemisphere 159.3
2587 Male, age 74, left hemisphere 154.8
1839 Male, age 51, unknown 149.7
Ventral tegmental area
nTPM: 165.2
2410 Female, age 72, unknown 193.4
1915 Female, age 42, unknown 171.8
2218 Male, age 76, both hemispheres 164.5
1942 Male, age 51, unknown 163.2
2021 Male, age 53, unknown 149.4
2223 Female, age 72, unknown 148.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 153.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.6
Samples: 183

Max nTPM: 1161.8
Min nTPM: 35.4
Std nTPM: 121.1
Median nTPM: 124.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1161.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 746.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 563.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 510.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 470.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 467.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 378.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 362.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 345.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 343.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 342.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 172.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.2
FF:10158-103A5 76 years, female 172.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 170.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.7
Samples: 3

Max nTPM: 98.4
Min nTPM: 47.7
Sample A Female 54.0
Sample B Female 98.4
Sample C Male 47.7
Midbrain
nTPM: 59.8
Samples: 3

Max nTPM: 95.7
Min nTPM: 29.9
Sample B Female 95.7
Sample C Male 53.8
Sample D Male 29.9
Periaqueductal gray
nTPM: 170.9
Samples: 3

Max nTPM: 180.4
Min nTPM: 165.8
Sample B Female 165.8
Sample C Male 180.4
Sample D Male 166.4
Superior colliculi
nTPM: 104.7
Samples: 4

Max nTPM: 262.2
Min nTPM: 46.8
Sample A Female 48.6
Sample B Female 262.2
Sample C Male 46.8
Sample D Male 61.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 31.1
Min nTPM: 27.3
Sample A 31.1
Sample B 28.6
Sample C 27.3
Sample D 28.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 9.9
Rat sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.7
Sample A 9.2
Sample A 9.4
Sample A 12.3
Sample A 8.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo