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RPS27A
HPA
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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • RPS27A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:826.9 nTPM
FANTOM5:39.7 Scaled Tags Per Million
Pig:54.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041344Antibody HPA049132Antibody CAB033319
Glial cells Not detectedHighHigh
Neuronal cells LowMediumLow






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

826.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 826.9
Samples: 300

Max nTPM: 2911.4
Min nTPM: 382.7
Std nTPM: 276.0
Median nTPM: 778.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2911.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2139.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1912.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1692.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1638.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1590.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1555.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1548.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1478.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1468.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1453.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1385.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1363.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1350.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1340.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1320.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1313.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1304.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1243.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1235.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1230.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1221.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1198.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1176.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1166.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1165.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1156.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1153.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1138.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1111.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1110.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1109.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1101.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1096.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1093.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1080.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1079.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1076.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1076.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1063.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1059.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1046.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1039.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1033.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1026.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1024.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1017.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1012.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1011.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 999.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 996.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 992.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 988.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 987.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 983.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 983.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 982.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 981.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 974.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 974.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 971.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 969.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 968.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 967.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 966.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 960.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 960.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 956.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 955.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 951.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 945.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 943.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 941.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 932.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 932.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 928.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 926.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 925.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 922.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 921.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 921.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 920.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 909.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 908.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 908.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 907.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 905.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 901.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 901.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 900.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 890.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 889.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 885.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 880.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 880.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 878.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 872.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 870.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 869.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 865.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 862.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 860.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 856.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 856.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 856.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 850.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 848.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 844.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 843.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 837.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 837.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 831.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 829.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 826.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 824.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 824.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 821.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 819.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 817.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 817.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 816.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 814.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 814.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 814.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 813.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 811.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 804.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 804.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 803.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 803.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 803.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 803.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 802.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 801.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 800.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 799.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 798.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 795.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 794.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 793.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 791.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 789.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 788.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 788.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 787.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 785.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 783.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 781.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 780.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 778.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 778.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 778.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 774.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 771.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 769.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 769.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 769.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 768.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 767.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 766.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 761.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 760.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 758.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 757.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 756.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 755.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 755.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 754.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 748.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 748.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 747.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 741.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 739.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 739.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 735.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 734.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 733.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 732.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 732.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 729.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 729.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 728.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 726.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 725.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 723.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 723.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 723.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 721.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 721.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 720.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 716.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 710.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 710.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 709.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 703.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 702.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 702.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 698.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 696.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 695.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 692.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 692.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 691.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 690.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 685.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 685.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 685.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 685.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 684.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 683.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 682.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 680.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 676.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 676.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 673.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 673.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 671.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 670.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 669.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 663.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 662.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 659.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 654.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 650.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 647.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 647.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 646.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 641.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 639.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 638.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 638.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 636.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 636.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 635.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 634.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 633.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 632.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 630.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 629.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 625.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 625.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 624.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 623.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 622.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 622.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 618.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 618.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 617.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 616.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 616.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 614.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 605.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 605.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 604.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 601.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 600.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 600.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 594.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 593.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 591.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 585.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 583.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 579.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 573.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 570.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 566.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 565.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 564.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 563.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 562.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 561.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 560.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 560.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 554.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 551.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 548.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 547.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 545.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 541.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 533.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 531.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 526.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 522.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 521.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 519.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 519.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 505.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 502.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 495.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 493.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 492.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 491.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 489.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 484.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 479.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 478.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 470.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 465.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 428.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 382.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.7
FF:10164-103B2 76 years, female 39.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.9
Pig sample Sample description nTPM
Caudate
nTPM: 54.9
Samples: 4

Max nTPM: 58.4
Min nTPM: 51.0
Sample A Female 58.4
Sample B Female 56.7
Sample C Male 53.5
Sample D Male 51.0

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