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RPS27A
HPA
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  • SUMMARY

  • TISSUE

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  • RPS27A
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1404.7 nTPM
HPA:796.8 nTPM
GTEx:1404.7 nTPM
FANTOM5:27.1 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041344Antibody HPA049132Antibody CAB033319
Glandular cells MediumHighLow







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

796.8
overview
Male, age 65
Small intestine sample 232
nTPM: 990
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 760.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 718.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 718.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1404.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1404.7
Samples: 207

Max nTPM: 3442.1
Min nTPM: 731.5
Std nTPM: 450.0
Median nTPM: 1336.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3442.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3075.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2740.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2599.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2581.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2576.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2565.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2550.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2491.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2481.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2301.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 2208.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2197.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2156.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2140.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2134.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1971.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1967.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1952.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1950.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1926.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1908.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1887.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1870.0
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1848.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1846.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1842.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1823.9
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1823.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1820.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1815.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1801.3
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1774.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1766.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1766.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 1754.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1753.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1743.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1733.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1733.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1728.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1692.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1690.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1673.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1669.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1668.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1660.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1656.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1655.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1643.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1642.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1634.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1633.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1626.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1623.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1616.1
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1610.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1607.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1586.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1575.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1574.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1556.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1553.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1544.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1539.8
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1537.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1536.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1534.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1528.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1516.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1514.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1511.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1508.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1506.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1494.1
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1493.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1489.5
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1466.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1451.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1441.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1438.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1435.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1430.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1429.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1423.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1423.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1420.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1415.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1396.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1394.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1390.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1388.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1373.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1372.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1360.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1357.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1355.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1353.4
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1350.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1348.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1347.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1343.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1341.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1336.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1332.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1327.8
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1316.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1309.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1303.8
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1286.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1285.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1274.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1270.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1265.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1263.6
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1253.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1249.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1248.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1244.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1241.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1238.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1235.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1233.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1232.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1218.5
GTEX-178AV-1226-SM-GOR11 40-49 years, male 1212.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1212.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1209.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1208.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1205.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1200.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1197.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1196.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1192.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1191.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1191.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1191.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1174.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1164.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1163.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 1159.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1156.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1152.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1152.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1132.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1117.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1115.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1112.0
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 1111.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1108.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1108.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1107.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1103.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1102.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1095.9
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 1080.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1079.5
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 1079.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1073.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1072.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1068.7
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 1036.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1029.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1023.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1023.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1022.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1021.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1014.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1014.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1014.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1009.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1004.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 986.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 984.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 976.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 975.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 973.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 968.4
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 961.8
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 958.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 957.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 955.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 950.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 935.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 933.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 914.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 913.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 911.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 910.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 906.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 902.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 879.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 873.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 871.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 851.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 841.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 828.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 828.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 824.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 809.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 804.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 798.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 783.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 775.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 762.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 751.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 731.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 27.1
FF:10024-101D6 15,40,85 years, mixed 27.1

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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