A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
223.5
nTPM
Monaco:
96.7
nTPM
Schmiedel:
34.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
223.5
HPA sample
nTPM
Classical monocyte nTPM: 169.0
Samples: 6
Max nTPM: 218.7
Min nTPM: 112.3
P10809_1003
112.3
P10809_1020
142.1
P10809_1039
180.4
P10809_1058
181.5
P10809_1080
179.0
P10809_1107
218.7
Intermediate monocyte nTPM: 219.8
Samples: 6
Max nTPM: 352.8
Min nTPM: 125.7
P10809_1004
125.7
P10809_1023
204.0
P10809_1042
208.3
P10809_1061
169.6
P10809_1081
258.1
P10809_1108
352.8
Non-classical monocyte nTPM: 223.5
Samples: 5
Max nTPM: 318.8
Min nTPM: 150.2
P10809_1005
150.2
P10809_1053
200.3
P10809_1072
150.7
P10809_1082
297.6
P10809_1109
318.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.7
Monaco sample
nTPM
Classical monocyte nTPM: 60.1
Samples: 4
Max nTPM: 75.4
Min nTPM: 45.3
RHH5313_R3680
75.4
RHH5221_R3593
64.3
RHH5250_R3622
45.3
RHH5279_R3651
55.3
Intermediate monocyte nTPM: 96.8
Samples: 4
Max nTPM: 123.3
Min nTPM: 74.6
RHH5314_R3681
99.2
RHH5222_R3594
123.3
RHH5251_R3623
89.9
RHH5280_R3652
74.6
Non-classical monocyte nTPM: 77.1
Samples: 4
Max nTPM: 94.7
Min nTPM: 51.0
RHH5315_R3682
87.1
RHH5223_R3595
94.7
RHH5252_R3624
75.4
RHH5281_R3653
51.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.4
Schmiedel sample id
TPM
Classical monocyte TPM: 30.7
Samples: 91
Max TPM: 40.9
Min TPM: 20.4
MONOCYTES_1
40.9
MONOCYTES_2
40.3
MONOCYTES_3
39.4
MONOCYTES_4
38.6
MONOCYTES_5
36.8
MONOCYTES_6
35.6
MONOCYTES_7
35.6
MONOCYTES_8
35.2
MONOCYTES_9
35.1
MONOCYTES_10
35.0
MONOCYTES_11
34.9
MONOCYTES_12
34.8
MONOCYTES_13
34.3
MONOCYTES_14
34.2
MONOCYTES_15
34.1
MONOCYTES_16
34.1
MONOCYTES_17
34.0
MONOCYTES_18
34.0
MONOCYTES_19
33.6
MONOCYTES_20
33.5
MONOCYTES_21
33.5
MONOCYTES_22
33.3
MONOCYTES_23
33.1
MONOCYTES_24
33.0
MONOCYTES_25
32.8
MONOCYTES_26
32.7
MONOCYTES_27
32.7
MONOCYTES_28
32.3
MONOCYTES_29
32.2
MONOCYTES_30
32.0
MONOCYTES_31
31.8
MONOCYTES_32
31.6
MONOCYTES_33
31.5
MONOCYTES_34
31.5
MONOCYTES_35
31.5
MONOCYTES_36
31.4
MONOCYTES_37
31.4
MONOCYTES_38
31.4
MONOCYTES_39
31.3
MONOCYTES_40
31.3
MONOCYTES_41
31.3
MONOCYTES_42
31.2
MONOCYTES_43
31.2
MONOCYTES_44
30.9
MONOCYTES_45
30.9
MONOCYTES_46
30.9
MONOCYTES_47
30.7
MONOCYTES_48
30.7
MONOCYTES_49
30.7
MONOCYTES_50
30.5
MONOCYTES_51
30.4
MONOCYTES_52
30.4
MONOCYTES_53
30.3
MONOCYTES_54
30.2
MONOCYTES_55
30.2
MONOCYTES_56
30.1
MONOCYTES_57
30.0
MONOCYTES_58
29.9
MONOCYTES_59
29.6
MONOCYTES_60
29.6
MONOCYTES_61
29.4
MONOCYTES_62
29.4
MONOCYTES_63
29.0
MONOCYTES_64
28.7
MONOCYTES_65
28.6
MONOCYTES_66
28.2
MONOCYTES_67
28.2
MONOCYTES_68
28.1
MONOCYTES_69
27.8
MONOCYTES_70
27.8
MONOCYTES_71
27.8
MONOCYTES_72
27.6
MONOCYTES_73
27.5
MONOCYTES_74
27.3
MONOCYTES_75
27.3
MONOCYTES_76
27.2
MONOCYTES_77
27.2
MONOCYTES_78
27.1
MONOCYTES_79
26.8
MONOCYTES_80
26.8
MONOCYTES_81
26.7
MONOCYTES_82
26.1
MONOCYTES_83
26.1
MONOCYTES_84
25.6
MONOCYTES_85
25.6
MONOCYTES_86
25.2
MONOCYTES_87
24.6
MONOCYTES_88
23.8
MONOCYTES_89
23.8
MONOCYTES_90
23.5
MONOCYTES_91
20.4
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Non-classical monocyte TPM: 34.4
Samples: 90
Max TPM: 48.8
Min TPM: 24.3
M2_1
48.8
M2_2
47.9
M2_3
46.2
M2_4
45.0
M2_5
44.6
M2_6
44.2
M2_7
42.9
M2_8
42.6
M2_9
41.3
M2_10
41.2
M2_11
40.2
M2_12
40.0
M2_13
40.0
M2_14
39.5
M2_15
39.4
M2_16
39.1
M2_17
38.8
M2_18
38.5
M2_19
38.5
M2_20
38.4
M2_21
38.4
M2_22
38.1
M2_23
38.0
M2_24
37.9
M2_25
37.7
M2_26
37.5
M2_27
37.5
M2_28
37.0
M2_29
36.8
M2_30
36.7
M2_31
36.3
M2_32
36.0
M2_33
35.9
M2_34
35.8
M2_35
35.7
M2_36
35.6
M2_37
35.2
M2_38
35.0
M2_39
34.8
M2_40
34.7
M2_41
34.3
M2_42
34.2
M2_43
34.1
M2_44
34.0
M2_45
34.0
M2_46
34.0
M2_47
34.0
M2_48
34.0
M2_49
33.8
M2_50
33.7
M2_51
33.6
M2_52
33.4
M2_53
33.2
M2_54
33.1
M2_55
33.0
M2_56
33.0
M2_57
32.8
M2_58
32.7
M2_59
32.1
M2_60
31.3
M2_61
31.1
M2_62
31.0
M2_63
30.9
M2_64
30.9
M2_65
30.8
M2_66
30.8
M2_67
30.5
M2_68
30.3
M2_69
30.3
M2_70
30.2
M2_71
29.8
M2_72
29.8
M2_73
29.1
M2_74
29.1
M2_75
28.9
M2_76
28.6
M2_77
28.4
M2_78
28.4
M2_79
28.0
M2_80
28.0
M2_81
28.0
M2_82
27.7
M2_83
27.5
M2_84
27.3
M2_85
26.5
M2_86
26.2
M2_87
26.0
M2_88
25.9
M2_89
25.8
M2_90
24.3
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