BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:185.8 nTPM
HPA Brain:283.0 nTPM
GTEx:185.8 nTPM
FANTOM5:148.4 Scaled Tags Per Million
Macaque:102.6 nTPM
Mouse:89.2 nTPM
Rat:131.6 nTPM
Pig:158.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 283.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 203.8
2666 Male, age 74, left hemisphere 292.0
1830 Male, age 51, unknown 257.4
2586 Male, age 75, left hemisphere 244.2
1833 Male, age 53, unknown 228.2
2411 Female, age 72, unknown 200.8
1870 Female, age 42, unknown 184.4
2019 Male, age 18, unknown 176.8
2828 Female, age 72, unknown 170.9
1827 Male, age 72, unknown 142.2
2219 Male, age 76, both hemispheres 141.1
Dorsal raphe nucleus
nTPM: 136.8
2750 Male, age 76, both hemispheres 258.6
1828 Male, age 53, unknown 137.5
2016 Female, age 72, unknown 121.9
2047 Male, age 72, unknown 105.0
2298 Female, age 72, unknown 61.0
Inferior colliculus
nTPM: 118.2
1890 Male, age 53, unknown 136.5
2849 Male, age 72, unknown 129.6
1848 Female, age 42, unknown 127.0
2097 Female, age 72, unknown 79.6
Median raphe nucleus
nTPM: 164.7
2220 Male, age 76, midline 164.7
Periaquaductal grey, anterior
nTPM: 123.5
1947 Male, age 18, unknown 150.9
2502 Female, age 75, unknown 112.0
1795 Male, age 51, unknown 107.5
Periaquaductal grey, dorsal
nTPM: 87.0
2464 Female, age 72, unknown 123.9
1831 Male, age 72, unknown 107.2
1840 Male, age 53, unknown 68.5
2850 Male, age 76, both hemispheres 48.2
Periaquaductal grey, lateral
nTPM: 86.2
2053 Male, age 18, unknown 118.4
2272 Male, age 74, both hemispheres 93.3
2140 Male, age 76, both hemispheres 46.8
Pretectal area
nTPM: 114.1
1815 Male, age 53, unknown 172.6
1817 Female, age 42, unknown 143.2
2407 Male, age 75, both hemispheres 139.6
2825 Male, age 18, unknown 132.3
2007 Male, age 72, unknown 126.5
2316 Male, age 76, right hemisphere 110.3
1816 Male, age 51, unknown 102.7
1944 Female, age 72, unknown 97.2
2667 Female, age 75, unknown 82.8
2224 Female, age 72, unknown 77.8
2273 Male, age 74, both hemispheres 70.0
Red nucleus
nTPM: 283.0
2588 Male, age 74, left hemisphere 368.4
2503 Female, age 72, unknown 317.6
1904 Male, age 53, unknown 307.6
2823 Male, age 76, right hemisphere 301.9
2584 Male, age 75, left hemisphere 301.4
1865 Male, age 51, unknown 293.5
2227 Male, age 72, unknown 271.9
1821 Female, age 72, unknown 267.5
2769 Male, age 72, unknown 262.8
1954 Female, age 42, unknown 253.5
2725 Female, age 75, unknown 249.0
2785 Male, age 18, unknown 201.1
Substantia nigra
nTPM: 184.7
2665 Male, age 74, both hemispheres 245.6
2583 Male, age 75, right hemisphere 221.7
2409 Female, age 72, unknown 211.7
2590 Female, age 75, unknown 203.2
1851 Male, age 51, unknown 181.8
1889 Female, age 72, unknown 168.2
2241 Male, age 72, unknown 163.1
2699 Male, age 18, unknown 156.6
1916 Female, age 42, unknown 150.1
1941 Male, age 53, unknown 145.1
Superior colliculus
nTPM: 155.2
2668 Female, age 75, unknown 220.0
2587 Male, age 74, left hemisphere 203.3
1995 Male, age 72, unknown 178.3
1839 Male, age 51, unknown 173.1
1913 Female, age 42, unknown 165.2
2664 Male, age 75, both hemispheres 136.9
1895 Male, age 76, right hemisphere 130.5
2261 Male, age 18, unknown 125.6
1796 Male, age 53, unknown 113.6
2087 Female, age 72, unknown 105.7
Ventral tegmental area
nTPM: 181.7
2223 Female, age 72, unknown 309.2
2410 Female, age 72, unknown 214.6
2218 Male, age 76, both hemispheres 165.1
1915 Female, age 42, unknown 136.5
1942 Male, age 51, unknown 134.5
2021 Male, age 53, unknown 130.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 185.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.8
Samples: 183

Max nTPM: 508.9
Min nTPM: 28.3
Std nTPM: 104.4
Median nTPM: 156.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 508.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 494.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 481.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 466.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 461.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 439.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 421.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 409.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 396.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 385.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 385.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 148.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.4
FF:10158-103A5 76 years, female 148.4

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 102.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 100.0
Samples: 1

Max nTPM: 100.0
Min nTPM: 100.0
Sample A 100.0
Midbrain
nTPM: 102.6
Samples: 1

Max nTPM: 102.6
Min nTPM: 102.6
Sample A 102.6
Superior colliculi
nTPM: 84.4
Samples: 1

Max nTPM: 84.4
Min nTPM: 84.4
Sample A 84.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 158.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 158.2
Samples: 3

Max nTPM: 179.6
Min nTPM: 121.0
Sample A Female 179.6
Sample B Female 121.0
Sample C Male 174.1
Midbrain
nTPM: 145.4
Samples: 3

Max nTPM: 159.4
Min nTPM: 120.6
Sample B Female 156.2
Sample C Male 159.4
Sample D Male 120.6
Periaqueductal gray
nTPM: 125.4
Samples: 3

Max nTPM: 130.9
Min nTPM: 115.6
Sample B Female 129.8
Sample C Male 115.6
Sample D Male 130.9
Superior colliculi
nTPM: 147.4
Samples: 4

Max nTPM: 172.8
Min nTPM: 105.3
Sample A Female 142.2
Sample B Female 105.3
Sample C Male 169.2
Sample D Male 172.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 89.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.2
Samples: 4

Max nTPM: 89.6
Min nTPM: 88.1
Sample A 89.6
Sample B 89.6
Sample C 88.1
Sample D 89.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 131.6
Rat sample Sample description nTPM
Midbrain
nTPM: 131.7
Samples: 4

Max nTPM: 137.4
Min nTPM: 120.2
Sample A 137.4
Sample A 133.7
Sample A 120.2
Sample A 135.3

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