MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.7 nTPM
HPA Brain:63.9 nTPM
GTEx:53.7 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:86.3 nTPM
Mouse:130.1 nTPM
Allen mouse:13.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.7
2019 Male, age 18, unknown 78.6
2586 Male, age 75, left hemisphere 70.3
2411 Female, age 72, unknown 59.5
1827 Male, age 72, unknown 59.2
2666 Male, age 74, left hemisphere 58.6
2828 Female, age 72, unknown 56.9
1870 Female, age 42, unknown 50.6
2219 Male, age 76, both hemispheres 44.7
1833 Male, age 53, unknown 44.6
1830 Male, age 51, unknown 44.1
Dorsal raphe nucleus
nTPM: 53.0
2298 Female, age 72, unknown 64.4
1828 Male, age 53, unknown 54.3
2047 Male, age 72, unknown 50.5
2016 Female, age 72, unknown 48.3
2750 Male, age 76, both hemispheres 47.3
Inferior colliculus
nTPM: 53.0
2097 Female, age 72, unknown 69.2
1890 Male, age 53, unknown 54.8
1848 Female, age 42, unknown 50.0
2849 Male, age 72, unknown 38.1
Median raphe nucleus
nTPM: 44.4
2220 Male, age 76, midline 44.4
Periaquaductal grey, anterior
nTPM: 61.5
2502 Female, age 75, unknown 63.6
1795 Male, age 51, unknown 62.6
1947 Male, age 18, unknown 58.2
Periaquaductal grey, dorsal
nTPM: 45.5
2464 Female, age 72, unknown 49.8
1840 Male, age 53, unknown 48.0
1831 Male, age 72, unknown 47.0
2850 Male, age 76, both hemispheres 37.2
Periaquaductal grey, lateral
nTPM: 45.2
2053 Male, age 18, unknown 46.2
2272 Male, age 74, both hemispheres 45.8
2140 Male, age 76, both hemispheres 43.6
Pretectal area
nTPM: 63.9
2007 Male, age 72, unknown 89.1
1816 Male, age 51, unknown 79.9
1817 Female, age 42, unknown 75.3
1815 Male, age 53, unknown 70.3
1944 Female, age 72, unknown 67.9
2667 Female, age 75, unknown 65.1
2407 Male, age 75, both hemispheres 60.5
2316 Male, age 76, right hemisphere 49.5
2224 Female, age 72, unknown 48.6
2273 Male, age 74, both hemispheres 48.5
2825 Male, age 18, unknown 48.0
Red nucleus
nTPM: 52.3
2785 Male, age 18, unknown 67.4
2588 Male, age 74, left hemisphere 60.6
1821 Female, age 72, unknown 60.5
2584 Male, age 75, left hemisphere 55.4
1904 Male, age 53, unknown 52.5
2503 Female, age 72, unknown 52.4
2725 Female, age 75, unknown 51.6
2769 Male, age 72, unknown 47.0
2227 Male, age 72, unknown 46.9
1865 Male, age 51, unknown 46.4
1954 Female, age 42, unknown 44.5
2823 Male, age 76, right hemisphere 42.0
Substantia nigra
nTPM: 57.4
2241 Male, age 72, unknown 67.1
1851 Male, age 51, unknown 66.6
1889 Female, age 72, unknown 66.1
1916 Female, age 42, unknown 62.7
2583 Male, age 75, right hemisphere 61.3
2409 Female, age 72, unknown 56.6
2665 Male, age 74, both hemispheres 54.0
1941 Male, age 53, unknown 53.1
2590 Female, age 75, unknown 51.1
2699 Male, age 18, unknown 35.6
Superior colliculus
nTPM: 56.5
2664 Male, age 75, both hemispheres 68.0
2087 Female, age 72, unknown 65.7
2261 Male, age 18, unknown 65.0
1796 Male, age 53, unknown 60.0
2668 Female, age 75, unknown 57.7
1839 Male, age 51, unknown 52.1
1995 Male, age 72, unknown 51.6
1913 Female, age 42, unknown 50.2
2587 Male, age 74, left hemisphere 48.1
1895 Male, age 76, right hemisphere 46.5
Ventral tegmental area
nTPM: 52.9
2410 Female, age 72, unknown 64.3
1915 Female, age 42, unknown 58.6
1942 Male, age 51, unknown 51.8
2021 Male, age 53, unknown 49.4
2218 Male, age 76, both hemispheres 47.5
2223 Female, age 72, unknown 46.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.7
Samples: 183

Max nTPM: 101.6
Min nTPM: 28.2
Std nTPM: 12.6
Median nTPM: 51.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 101.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 90.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 82.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 80.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 79.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 79.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 79.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 78.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 78.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 77.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 76.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.9
Samples: 4

Max nTPM: 97.0
Min nTPM: 57.7
Sample A Female 97.0
Sample B Female 59.3
Sample C Male 85.5
Sample D Male 57.7
Midbrain
nTPM: 80.0
Samples: 4

Max nTPM: 99.3
Min nTPM: 64.6
Sample A Female 72.2
Sample B Female 64.6
Sample C Male 99.3
Sample D Male 83.8
Periaqueductal gray
nTPM: 64.3
Samples: 3

Max nTPM: 74.6
Min nTPM: 58.2
Sample B Female 58.2
Sample C Male 74.6
Sample D Male 60.0
Superior colliculi
nTPM: 86.3
Samples: 4

Max nTPM: 98.0
Min nTPM: 66.9
Sample A Female 98.0
Sample B Female 66.9
Sample C Male 90.9
Sample D Male 89.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 130.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.1
Samples: 4

Max nTPM: 136.5
Min nTPM: 123.8
Sample A Male 123.8
Sample B Male 130.7
Sample C Female 136.5
Sample D Female 129.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
386010 Antisense, RP_040625_01_H10, Mouse strain C57BL/6J (56 days, male) 13.2

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