On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Cells in endometrial stroma:
Low
Glandular cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA047501
Antibody HPA051994
Cells in endometrial stroma
Not detected
Not detected
Glandular cells
Medium
Medium
ENDOMETRIUM 2 - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA047501
Antibody HPA051994
Cells in endometrial stroma
Low
Not detected
Glandular cells
Medium
Low
ENDOMETRIUM - PROTEINTALKS DB MS
Median intensity
51702
Sample
Intensity
Endometrium_01
51702
ENDOMETRIUM - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1364.0
Female, age 34
Endometrium sample 113 nTPM: 693.5
Cell types%
Glandular cells:
5
Stromal cells:
25
Smooth muscle cells:
65
Other cell types:
5
Female, age 56
Endometrium sample 114 nTPM: 1327
Cell types%
Glandular cells:
5
Stromal cells:
15
Smooth muscle cells:
75
Other cell types:
5
Female, age 40
Endometrium sample 268 nTPM: 1206.8
Cell types%
Glandular cells:
5
Stromal cells:
20
Smooth muscle cells:
70
Other cell types:
5
Female, age 60
Endometrium sample 297 nTPM: 2231.5
Cell types%
Glandular cells:
5
Stromal cells:
20
Smooth muscle cells:
75
Other cell types:
0
Female, age 83
Endometrium sample 301 nTPM: 1361
Cell types%
Glandular cells:
5
Stromal cells:
10
Smooth muscle cells:
80
Other cell types:
5
ENDOMETRIUM - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1462.8
GTEx sample id
Sample description
nTPM
Uterus - Endometrium Average nTPM: 1462.8
Samples: 27
Max nTPM: 2405.1
Min nTPM: 905.9
Std nTPM: 331.2
Median nTPM: 1451.0
GTEX-15SHU-2826-SM-H7OGU
40-49 years, female
2405.1
GTEX-14BIN-1526-SM-5P9FL
50-59 years, female
2244.8
GTEX-ZTPG-2026-SM-5O999
20-29 years, female
1817.8
GTEX-ZXES-0726-SM-5E451
30-39 years, female
1788.8
GTEX-13D11-1226-SM-5IFGA
50-59 years, female
1659.5
GTEX-Y114-1826-SM-4TT87
50-59 years, female
1640.4
GTEX-P78B-2526-SM-3P5ZY
40-49 years, female
1632.1
GTEX-S32W-1426-SM-4AD66
50-59 years, female
1537.6
GTEX-13VXT-1626-SM-5IJES
20-29 years, female
1516.0
GTEX-1HCUA-1226-SM-9WPP5
50-59 years, female
1510.6
GTEX-11EM3-1926-SM-5987U
20-29 years, female
1491.2
GTEX-T6MO-1526-SM-4DM57
40-49 years, female
1473.8
GTEX-1B932-2726-SM-731ER
40-49 years, female
1453.9
GTEX-1R9PN-0526-SM-DTX86
40-49 years, female
1451.0
GTEX-13QBU-1626-SM-5LU4S
40-49 years, female
1449.9
GTEX-PWCY-1426-SM-48TCT
20-29 years, female
1431.8
GTEX-XV7Q-1526-SM-4BRWB
40-49 years, female
1364.4
GTEX-1I4MK-1426-SM-B2LWU
50-59 years, female
1352.1
GTEX-1MCYP-1226-SM-DTX8H
20-29 years, female
1350.7
GTEX-R55G-1626-SM-48FF4
40-49 years, female
1263.0
GTEX-PX3G-2026-SM-48U1H
20-29 years, female
1223.8
GTEX-T5JW-1526-SM-4DM5E
20-29 years, female
1223.8
GTEX-ZVT2-0426-SM-5E44S
50-59 years, female
1202.3
GTEX-PWN1-2026-SM-48TD9
40-49 years, female
1082.8
GTEX-1CAMS-2026-SM-79395
40-49 years, female
1013.1
GTEX-U3ZN-0726-SM-4DXT5
30-39 years, female
1009.6
GTEX-XUZC-0926-SM-4BOQF
30-39 years, female
905.9
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ENDOMETRIUM - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
301.5
Pig sample
Sample description
nTPM
Endometrium nTPM: 301.5
Samples: 2
Max nTPM: 318.0
Min nTPM: 284.9
Sample A
Female
318.0
Sample B
Female
284.9
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