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  • TAGLN3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:317.7 nTPM
HPA Brain:152.4 nTPM
GTEx:317.7 nTPM
FANTOM5:139.7 Scaled Tags Per Million
Pig:177.0 nTPM
Mouse:362.1 nTPM
Allen mouse:12.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.4
Sample id Sample description nTPM
Amygdala
nTPM: 119.4
2814 Male, age 76, right hemisphere 185.8
1987 Female, age 91, left hemisphere 158.7
2517 Female, age 94, left hemisphere 137.7
2514 Male, age 75, right hemisphere 61.5
2695 Female, age 67, right hemisphere 53.4
Basal amygdala
nTPM: 146.3
2685 Female, age 94, left hemisphere 202.4
2243 Female, age 91, right hemisphere 194.6
2110 Male, age 80, left hemisphere 177.1
1955 Male, age 76, both hemispheres 151.3
2827 Female, age 67, right hemisphere 83.5
2609 Male, age 75, right hemisphere 69.1
Central amygdala
nTPM: 134.3
1905 Male, age 76, both hemispheres 176.4
2239 Male, age 80, left hemisphere 156.4
2701 Female, age 91, right hemisphere 141.8
2826 Female, age 94, left hemisphere 125.6
2515 Male, age 75, right hemisphere 71.1
Corticomedial amygdala
nTPM: 152.4
2429 Female, age 94, left hemisphere 201.6
2829 Male, age 80, left hemisphere 189.4
2242 Female, age 91, right hemisphere 180.8
2240 Male, age 76, both hemispheres 144.8
2535 Female, age 67, right hemisphere 128.3
2428 Male, age 75, right hemisphere 69.3
Lateral amygdala
nTPM: 116.2
1883 Male, age 76, both hemispheres 197.0
2534 Female, age 94, left hemisphere 156.8
2255 Female, age 91, right hemisphere 131.0
2256 Male, age 80, left hemisphere 84.6
2516 Male, age 75, right hemisphere 67.6
2830 Female, age 67, right hemisphere 60.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 317.7
Samples: 181

Max nTPM: 844.1
Min nTPM: 50.6
Std nTPM: 158.4
Median nTPM: 289.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 844.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 834.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 773.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 755.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 746.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 705.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 693.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 627.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 612.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 591.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 586.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 564.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 563.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 562.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 543.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 542.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 536.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 531.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 527.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 521.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 512.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 506.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 504.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 492.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 489.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 484.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 483.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 481.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 474.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 470.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 469.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 465.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 460.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 447.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 447.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 439.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 439.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 437.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 433.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 425.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 418.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 416.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 411.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 410.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 406.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 401.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 400.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 398.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 396.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 392.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 385.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 382.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 375.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 374.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 372.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 368.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 367.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 366.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 365.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 364.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 362.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 360.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 358.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 357.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 355.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 354.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 353.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 350.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 350.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 350.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 349.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 346.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 344.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 344.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 340.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 338.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 329.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 328.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 321.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 317.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 311.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 310.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 310.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 310.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 310.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 308.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 302.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 301.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 299.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 298.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 289.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 289.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 286.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 286.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 285.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 285.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 280.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 278.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 277.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 277.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 274.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 271.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 270.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 269.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 268.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 266.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 263.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 256.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 251.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 251.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 249.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 247.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 246.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 245.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 242.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 240.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 239.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 236.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 234.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 233.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 232.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 231.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 230.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 223.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 223.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 222.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 214.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 214.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 213.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 213.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 211.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 210.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 206.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 205.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 203.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 202.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 202.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 202.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 201.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 201.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 191.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 188.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 182.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 180.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 177.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 171.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 169.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 168.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 165.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 161.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 159.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 158.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 157.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 156.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 154.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 151.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 149.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 147.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 146.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 141.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 141.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 138.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 137.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 131.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 129.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 123.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 117.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 103.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 100.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 99.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 98.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 95.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 84.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 76.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 68.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 58.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 50.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 139.7
FF:10151-102I7 76 years, female 139.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.0
Pig sample Sample description nTPM
Amygdala
nTPM: 177.0
Samples: 4

Max nTPM: 295.4
Min nTPM: 115.5
Sample A Female 295.4
Sample B Female 115.5
Sample C Male 132.8
Sample D Male 164.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

362.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 362.1
Samples: 4

Max nTPM: 380.8
Min nTPM: 347.8
Sample A Male 352.9
Sample B Male 366.8
Sample C Female 380.8
Sample D Female 347.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.8
75988633 Antisense, RP_060620_02_E05, Mouse strain C57BL/6J (56 days, male) 13.9
71280733 Antisense, RP_050818_01_E04, Mouse strain C57BL/6J (56 days, male) 11.8

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