MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:276.4 nTPM
HPA Brain:475.1 nTPM
GTEx:276.4 nTPM
FANTOM5:497.4 Scaled Tags Per Million
Pig:147.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 475.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 422.5
2586 Male, age 75, left hemisphere 470.7
1833 Male, age 53, unknown 469.3
2828 Female, age 72, unknown 463.6
2411 Female, age 72, unknown 460.8
1870 Female, age 42, unknown 441.3
1830 Male, age 51, unknown 423.3
1827 Male, age 72, unknown 407.3
2219 Male, age 76, both hemispheres 403.6
2019 Male, age 18, unknown 349.0
2666 Male, age 74, left hemisphere 336.0
Dorsal raphe nucleus
nTPM: 464.4
2047 Male, age 72, unknown 496.2
1828 Male, age 53, unknown 471.3
2016 Female, age 72, unknown 469.7
2298 Female, age 72, unknown 451.5
2750 Male, age 76, both hemispheres 433.4
Inferior colliculus
nTPM: 475.1
2097 Female, age 72, unknown 525.7
1890 Male, age 53, unknown 489.5
1848 Female, age 42, unknown 458.3
2849 Male, age 72, unknown 427.0
Median raphe nucleus
nTPM: 437.1
2220 Male, age 76, midline 437.1
Periaquaductal grey, anterior
nTPM: 396.1
2502 Female, age 75, unknown 486.4
1947 Male, age 18, unknown 369.3
1795 Male, age 51, unknown 332.6
Periaquaductal grey, dorsal
nTPM: 401.9
2850 Male, age 76, both hemispheres 445.9
2464 Female, age 72, unknown 429.4
1840 Male, age 53, unknown 403.3
1831 Male, age 72, unknown 329.1
Periaquaductal grey, lateral
nTPM: 376.2
2140 Male, age 76, both hemispheres 415.0
2053 Male, age 18, unknown 398.0
2272 Male, age 74, both hemispheres 315.6
Pretectal area
nTPM: 380.3
2667 Female, age 75, unknown 413.6
2825 Male, age 18, unknown 404.3
2316 Male, age 76, right hemisphere 401.5
1944 Female, age 72, unknown 401.3
1817 Female, age 42, unknown 395.2
1815 Male, age 53, unknown 390.6
1816 Male, age 51, unknown 387.3
2224 Female, age 72, unknown 375.2
2407 Male, age 75, both hemispheres 354.8
2273 Male, age 74, both hemispheres 346.8
2007 Male, age 72, unknown 313.1
Red nucleus
nTPM: 444.7
1821 Female, age 72, unknown 544.8
1904 Male, age 53, unknown 508.4
1954 Female, age 42, unknown 497.4
2227 Male, age 72, unknown 496.4
2769 Male, age 72, unknown 494.5
1865 Male, age 51, unknown 470.2
2503 Female, age 72, unknown 467.3
2823 Male, age 76, right hemisphere 409.5
2785 Male, age 18, unknown 387.1
2588 Male, age 74, left hemisphere 377.7
2725 Female, age 75, unknown 350.4
2584 Male, age 75, left hemisphere 332.9
Substantia nigra
nTPM: 470.4
1916 Female, age 42, unknown 660.4
2699 Male, age 18, unknown 571.3
2241 Male, age 72, unknown 560.1
1851 Male, age 51, unknown 513.0
1941 Male, age 53, unknown 417.2
1889 Female, age 72, unknown 414.7
2409 Female, age 72, unknown 408.7
2590 Female, age 75, unknown 391.8
2583 Male, age 75, right hemisphere 385.9
2665 Male, age 74, both hemispheres 381.1
Superior colliculus
nTPM: 410.2
2664 Male, age 75, both hemispheres 449.1
2668 Female, age 75, unknown 445.8
1913 Female, age 42, unknown 435.8
2261 Male, age 18, unknown 421.0
1995 Male, age 72, unknown 416.8
2087 Female, age 72, unknown 406.5
1839 Male, age 51, unknown 403.6
1895 Male, age 76, right hemisphere 381.6
1796 Male, age 53, unknown 379.2
2587 Male, age 74, left hemisphere 362.1
Ventral tegmental area
nTPM: 446.1
1915 Female, age 42, unknown 506.4
2410 Female, age 72, unknown 465.3
2218 Male, age 76, both hemispheres 454.5
2223 Female, age 72, unknown 442.0
1942 Male, age 51, unknown 432.6
2021 Male, age 53, unknown 375.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 276.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 276.4
Samples: 183

Max nTPM: 536.2
Min nTPM: 77.3
Std nTPM: 78.3
Median nTPM: 273.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 536.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 502.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 469.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 465.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 464.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 444.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 433.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 423.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 416.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 401.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 398.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 497.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 497.4
FF:10158-103A5 76 years, female 497.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 147.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 139.3
Samples: 4

Max nTPM: 171.4
Min nTPM: 94.5
Sample A Female 163.4
Sample B Female 94.5
Sample C Male 127.7
Sample D Male 171.4
Midbrain
nTPM: 147.1
Samples: 4

Max nTPM: 250.1
Min nTPM: 103.1
Sample A Female 250.1
Sample B Female 123.4
Sample C Male 111.7
Sample D Male 103.1
Periaqueductal gray
nTPM: 114.8
Samples: 3

Max nTPM: 120.3
Min nTPM: 104.4
Sample B Female 119.7
Sample C Male 120.3
Sample D Male 104.4
Superior colliculi
nTPM: 118.9
Samples: 4

Max nTPM: 165.0
Min nTPM: 71.9
Sample A Female 165.0
Sample B Female 71.9
Sample C Male 114.3
Sample D Male 124.2

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