RPS3A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • RPS3A
EVOLUTIONARY URINARY BLADDER Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Kidney & Urinary bladder
Evolutionary methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2222.0 nTPM
HPA:1762.4 nTPM
GTEx:2222.0 nTPM
FANTOM5:100.2 Scaled Tags Per Million
Macaque:45.1 nTPM
Mouse:1933.2 nTPM
Rat:1134.0 nTPM
Pig:770.1 nTPM
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047100
Urothelial cells Medium


URINARY BLADDER - PROTEINTALKS DB MS
Median intensity 40157
Sample Intensity
Urinary bladder_01
40157

URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1762.4
overview
Male, age 74
Urinary bladder sample 264
nTPM: 1537.6
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 1794.7
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 79
Urinary bladder sample 1597
nTPM: 1844.9
N/A
Male, age 52
Urinary bladder sample 1598
nTPM: 1872.3

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2222.0
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 2222.0
Samples: 77

Max nTPM: 3649.0
Min nTPM: 1310.0
Std nTPM: 466.1
Median nTPM: 2245.4
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 3649.0
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 3444.1
GTEX-Q734-1226-SM-GRR21 40-49 years, female 3384.6
GTEX-R45C-2426-SM-HL11G 60-69 years, female 3258.9
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 3126.6
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 2866.8
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 2759.4
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 2727.4
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 2714.5
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 2690.4
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 2674.3
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 2600.7
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 2570.1
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 2560.6
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 2526.2
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 2523.4
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 2475.6
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 2454.8
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 2448.4
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 2430.7
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 2422.6
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 2417.9
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 2401.5
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 2400.0
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 2396.0
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 2386.4
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 2377.8
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 2368.2
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 2348.7
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 2346.9
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 2318.4
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 2305.8
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 2291.9
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 2288.8
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 2269.1
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 2260.7
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 2259.6
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 2254.9
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 2245.4
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 2245.3
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 2241.0
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 2231.2
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 2230.5
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 2175.4
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 2125.1
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 2110.5
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 2102.2
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 2101.4
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 2059.6
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 2037.9
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 1969.8
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 1957.0
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 1955.0
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 1953.4
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 1923.9
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 1923.6
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 1920.9
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 1903.5
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 1882.2
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 1881.0
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 1838.6
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 1828.1
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 1820.4
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 1818.5
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 1815.1
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 1803.8
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 1794.3
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 1716.4
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 1653.3
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 1616.4
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 1560.1
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 1557.8
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 1536.5
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 1485.9
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 1447.8
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 1310.7
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 1310.0
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 100.2
FF:10011-101C2 55,58,79 years, mixed 100.2

URINARY BLADDER - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.1
Macaque sample Sample description nTPM
Urinary bladder
nTPM: 45.1
Samples: 3

Max nTPM: 50.8
Min nTPM: 35.5
Sample A 50.8
Sample B 35.5
Sample C 49.0

URINARY BLADDER - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

770.1
Pig sample Sample description nTPM
Urinary bladder
nTPM: 770.1
Samples: 4

Max nTPM: 1217.5
Min nTPM: 512.0
Sample A Female 819.1
Sample B Female 531.9
Sample C Male 512.0
Sample D Male 1217.5

URINARY BLADDER - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1933.2
Mouse sample Sample description nTPM
Urinary bladder
nTPM: 1933.2
Samples: 4

Max nTPM: 2448.1
Min nTPM: 1308.8
Sample D 2448.1
Sample A 2054.8
Sample B 1308.8
Sample C 1921.1

URINARY BLADDER - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1134.0
Rat sample Sample description nTPM
Urinary bladder
nTPM: 1134.0
Samples: 4

Max nTPM: 1285.4
Min nTPM: 1020.3
Sample A 1285.4
Sample A 1020.3
Sample A 1096.1
Sample A 1134.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.