A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
15.6
nTPM
Schmiedel:
16.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.6
Min nTPM: 1.0
P10809_1003
1.0
P10809_1020
1.2
P10809_1039
1.3
P10809_1058
1.0
P10809_1080
1.2
P10809_1107
1.6
Intermediate monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.6
P10809_1004
0.7
P10809_1023
0.6
P10809_1042
1.3
P10809_1061
1.0
P10809_1081
0.7
P10809_1108
1.1
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 7.8
Min nTPM: 0.3
P10809_1005
0.3
P10809_1053
0.7
P10809_1072
7.8
P10809_1082
0.6
P10809_1109
0.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.6
Monaco sample
nTPM
Classical monocyte nTPM: 15.6
Samples: 4
Max nTPM: 22.6
Min nTPM: 9.5
RHH5313_R3680
22.6
RHH5221_R3593
9.5
RHH5250_R3622
11.5
RHH5279_R3651
18.9
Intermediate monocyte nTPM: 11.8
Samples: 4
Max nTPM: 17.4
Min nTPM: 7.4
RHH5314_R3681
11.9
RHH5222_R3594
7.4
RHH5251_R3623
17.4
RHH5280_R3652
10.5
Non-classical monocyte nTPM: 9.3
Samples: 4
Max nTPM: 14.9
Min nTPM: 5.5
RHH5315_R3682
10.8
RHH5223_R3595
14.9
RHH5252_R3624
5.5
RHH5281_R3653
6.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.9
Schmiedel sample id
TPM
Classical monocyte TPM: 16.9
Samples: 91
Max TPM: 24.6
Min TPM: 11.1
MONOCYTES_1
24.6
MONOCYTES_2
24.2
MONOCYTES_3
24.1
MONOCYTES_4
22.9
MONOCYTES_5
22.6
MONOCYTES_6
22.2
MONOCYTES_7
22.0
MONOCYTES_8
21.9
MONOCYTES_9
21.9
MONOCYTES_10
20.4
MONOCYTES_11
20.3
MONOCYTES_12
20.0
MONOCYTES_13
19.7
MONOCYTES_14
19.6
MONOCYTES_15
19.6
MONOCYTES_16
19.4
MONOCYTES_17
19.3
MONOCYTES_18
19.1
MONOCYTES_19
19.0
MONOCYTES_20
18.9
MONOCYTES_21
18.9
MONOCYTES_22
18.7
MONOCYTES_23
18.7
MONOCYTES_24
18.5
MONOCYTES_25
18.4
MONOCYTES_26
18.4
MONOCYTES_27
18.3
MONOCYTES_28
18.2
MONOCYTES_29
18.0
MONOCYTES_30
17.7
MONOCYTES_31
17.7
MONOCYTES_32
17.7
MONOCYTES_33
17.7
MONOCYTES_34
17.6
MONOCYTES_35
17.6
MONOCYTES_36
17.6
MONOCYTES_37
17.5
MONOCYTES_38
17.4
MONOCYTES_39
17.0
MONOCYTES_40
16.9
MONOCYTES_41
16.8
MONOCYTES_42
16.8
MONOCYTES_43
16.8
MONOCYTES_44
16.7
MONOCYTES_45
16.6
MONOCYTES_46
16.6
MONOCYTES_47
16.5
MONOCYTES_48
16.5
MONOCYTES_49
16.5
MONOCYTES_50
16.4
MONOCYTES_51
16.2
MONOCYTES_52
16.2
MONOCYTES_53
16.2
MONOCYTES_54
16.1
MONOCYTES_55
16.0
MONOCYTES_56
16.0
MONOCYTES_57
16.0
MONOCYTES_58
15.8
MONOCYTES_59
15.6
MONOCYTES_60
15.5
MONOCYTES_61
15.5
MONOCYTES_62
15.3
MONOCYTES_63
15.1
MONOCYTES_64
15.1
MONOCYTES_65
15.0
MONOCYTES_66
14.9
MONOCYTES_67
14.9
MONOCYTES_68
14.8
MONOCYTES_69
14.7
MONOCYTES_70
14.6
MONOCYTES_71
14.6
MONOCYTES_72
14.6
MONOCYTES_73
14.5
MONOCYTES_74
14.5
MONOCYTES_75
14.4
MONOCYTES_76
14.4
MONOCYTES_77
14.0
MONOCYTES_78
13.9
MONOCYTES_79
13.8
MONOCYTES_80
13.5
MONOCYTES_81
13.5
MONOCYTES_82
13.3
MONOCYTES_83
13.2
MONOCYTES_84
13.2
MONOCYTES_85
12.8
MONOCYTES_86
12.7
MONOCYTES_87
12.5
MONOCYTES_88
12.4
MONOCYTES_89
12.2
MONOCYTES_90
11.8
MONOCYTES_91
11.1
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Non-classical monocyte TPM: 10.4
Samples: 90
Max TPM: 18.1
Min TPM: 5.6
M2_1
18.1
M2_2
17.1
M2_3
15.7
M2_4
14.9
M2_5
14.9
M2_6
14.8
M2_7
14.5
M2_8
14.2
M2_9
14.0
M2_10
13.9
M2_11
13.8
M2_12
13.1
M2_13
13.0
M2_14
12.6
M2_15
12.4
M2_16
12.3
M2_17
12.1
M2_18
12.0
M2_19
12.0
M2_20
11.9
M2_21
11.8
M2_22
11.8
M2_23
11.8
M2_24
11.7
M2_25
11.6
M2_26
11.5
M2_27
11.5
M2_28
11.4
M2_29
11.4
M2_30
11.3
M2_31
11.2
M2_32
11.1
M2_33
11.0
M2_34
10.9
M2_35
10.6
M2_36
10.6
M2_37
10.5
M2_38
10.5
M2_39
10.5
M2_40
10.4
M2_41
10.4
M2_42
10.3
M2_43
10.2
M2_44
10.1
M2_45
10.0
M2_46
9.9
M2_47
9.8
M2_48
9.8
M2_49
9.7
M2_50
9.7
M2_51
9.7
M2_52
9.7
M2_53
9.7
M2_54
9.5
M2_55
9.5
M2_56
9.5
M2_57
9.5
M2_58
9.4
M2_59
9.4
M2_60
9.3
M2_61
9.3
M2_62
9.1
M2_63
9.1
M2_64
9.0
M2_65
9.0
M2_66
8.7
M2_67
8.7
M2_68
8.7
M2_69
8.7
M2_70
8.5
M2_71
8.5
M2_72
8.4
M2_73
8.3
M2_74
8.2
M2_75
8.2
M2_76
8.1
M2_77
8.1
M2_78
7.9
M2_79
7.8
M2_80
7.7
M2_81
7.7
M2_82
7.6
M2_83
7.0
M2_84
7.0
M2_85
6.9
M2_86
6.9
M2_87
6.7
M2_88
6.7
M2_89
6.4
M2_90
5.6
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