MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:286.0 nTPM
HPA Brain:138.3 nTPM
GTEx:286.0 nTPM
FANTOM5:76.4 Scaled Tags Per Million
Pig:165.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 138.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.8
2411 Female, age 72, unknown 131.7
1830 Male, age 51, unknown 129.2
1833 Male, age 53, unknown 128.6
1870 Female, age 42, unknown 122.9
2828 Female, age 72, unknown 115.2
2666 Male, age 74, left hemisphere 113.0
2219 Male, age 76, both hemispheres 109.5
1827 Male, age 72, unknown 107.3
2586 Male, age 75, left hemisphere 107.1
2019 Male, age 18, unknown 93.6
Dorsal raphe nucleus
nTPM: 115.9
2750 Male, age 76, both hemispheres 130.6
2016 Female, age 72, unknown 121.1
2298 Female, age 72, unknown 111.8
1828 Male, age 53, unknown 111.3
2047 Male, age 72, unknown 104.8
Inferior colliculus
nTPM: 120.8
2849 Male, age 72, unknown 139.8
1890 Male, age 53, unknown 132.4
1848 Female, age 42, unknown 113.1
2097 Female, age 72, unknown 98.0
Median raphe nucleus
nTPM: 123.4
2220 Male, age 76, midline 123.4
Periaquaductal grey, anterior
nTPM: 119.1
2502 Female, age 75, unknown 144.7
1947 Male, age 18, unknown 111.4
1795 Male, age 51, unknown 101.2
Periaquaductal grey, dorsal
nTPM: 112.6
2850 Male, age 76, both hemispheres 127.5
1831 Male, age 72, unknown 116.1
1840 Male, age 53, unknown 107.7
2464 Female, age 72, unknown 99.1
Periaquaductal grey, lateral
nTPM: 106.7
2140 Male, age 76, both hemispheres 112.2
2272 Male, age 74, both hemispheres 104.1
2053 Male, age 18, unknown 103.9
Pretectal area
nTPM: 99.3
2224 Female, age 72, unknown 120.0
2316 Male, age 76, right hemisphere 112.0
1817 Female, age 42, unknown 108.8
2825 Male, age 18, unknown 107.5
2007 Male, age 72, unknown 102.0
1944 Female, age 72, unknown 95.4
1816 Male, age 51, unknown 94.0
1815 Male, age 53, unknown 93.5
2273 Male, age 74, both hemispheres 89.6
2407 Male, age 75, both hemispheres 87.9
2667 Female, age 75, unknown 82.1
Red nucleus
nTPM: 127.2
2503 Female, age 72, unknown 167.9
1904 Male, age 53, unknown 137.8
2227 Male, age 72, unknown 137.3
1865 Male, age 51, unknown 136.0
2725 Female, age 75, unknown 134.9
2769 Male, age 72, unknown 134.5
2588 Male, age 74, left hemisphere 133.9
1821 Female, age 72, unknown 120.6
2584 Male, age 75, left hemisphere 114.0
2785 Male, age 18, unknown 112.9
1954 Female, age 42, unknown 99.8
2823 Male, age 76, right hemisphere 97.3
Substantia nigra
nTPM: 117.7
2699 Male, age 18, unknown 177.7
1851 Male, age 51, unknown 134.0
2665 Male, age 74, both hemispheres 128.4
1889 Female, age 72, unknown 125.3
1916 Female, age 42, unknown 121.3
2409 Female, age 72, unknown 115.4
2590 Female, age 75, unknown 112.2
1941 Male, age 53, unknown 93.7
2583 Male, age 75, right hemisphere 87.6
2241 Male, age 72, unknown 81.1
Superior colliculus
nTPM: 116.6
1913 Female, age 42, unknown 152.7
2587 Male, age 74, left hemisphere 146.9
1995 Male, age 72, unknown 131.9
1796 Male, age 53, unknown 123.1
1895 Male, age 76, right hemisphere 115.4
1839 Male, age 51, unknown 111.0
2668 Female, age 75, unknown 107.0
2261 Male, age 18, unknown 101.4
2087 Female, age 72, unknown 96.8
2664 Male, age 75, both hemispheres 80.0
Ventral tegmental area
nTPM: 138.3
2223 Female, age 72, unknown 163.5
2410 Female, age 72, unknown 146.4
1915 Female, age 42, unknown 138.6
2021 Male, age 53, unknown 132.7
2218 Male, age 76, both hemispheres 125.6
1942 Male, age 51, unknown 123.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 286.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 286.0
Samples: 183

Max nTPM: 896.9
Min nTPM: 62.6
Std nTPM: 122.0
Median nTPM: 265.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 896.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 805.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 630.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 630.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 599.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 531.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 515.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 495.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 495.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 489.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 484.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 76.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.4
FF:10158-103A5 76 years, female 76.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 165.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 155.8
Samples: 4

Max nTPM: 215.3
Min nTPM: 101.8
Sample A Female 215.3
Sample B Female 179.7
Sample C Male 126.5
Sample D Male 101.8
Midbrain
nTPM: 165.0
Samples: 4

Max nTPM: 227.6
Min nTPM: 95.3
Sample A Female 227.6
Sample B Female 203.7
Sample C Male 133.4
Sample D Male 95.3
Periaqueductal gray
nTPM: 145.9
Samples: 3

Max nTPM: 168.7
Min nTPM: 125.7
Sample B Female 168.7
Sample C Male 143.4
Sample D Male 125.7
Superior colliculi
nTPM: 152.5
Samples: 4

Max nTPM: 196.2
Min nTPM: 118.3
Sample A Female 196.2
Sample B Female 118.3
Sample C Male 165.5
Sample D Male 130.1

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