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BETA
  • SUMMARY

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  • BRAIN

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  • RPL37
EVOLUTIONARY RETINA Show tissue menu
BRAIN41 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
HIPPOCAMPAL FORMATION HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:79.7 nTPM
GTEx:79.7 nTPM
FANTOM5:64.8 Scaled Tags Per Million
Rat:166.4 nTPM
Pig:49.1 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 79.7
Samples: 105

Max nTPM: 196.9
Min nTPM: 17.0
Std nTPM: 36.6
Median nTPM:
452_1 88 years, female 196.9
321_1 62 years, female 148.2
218_1 71 years, female 146.7
319_1 81 years, male 139.1
163_1 78 years, male 136.1
377_1 82 years, female 134.1
320_1 89 years, female 132.2
353_1 82 years, female 128.1
355_1 70 years, female 124.5
394_1 75 years, female 123.1
376_1 75 years, female 122.7
384_1 83 years, male 122.0
351_1 91 years, male 121.1
354_1 81 years, female 118.2
406_1 79 years, male 116.1
173_1 67 years, male 115.9
386_1 76 years, male 115.9
506_1 65 years, male 115.1
379_1 60 years, male 114.2
177_1 74 years, male 113.6
295_1 61 years, female 112.6
349_1 83 years, male 112.4
322_1 76 years, male 110.9
317_1 60 years, male 110.3
356_1 87 years, female 108.6
243_1 75 years, male 108.4
172_1 72 years, female 107.2
447_1 81 years, male 105.8
41_1 94 years, female 105.4
335_1 73 years, female 102.9
352_1 62 years, male 102.6
292_1 71 years, male 101.9
318_1 68 years, male 100.6
264_1 73 years, female 100.0
348_1 84 years, male 98.4
389_1 86 years, female 98.2
350_1 84 years, female 98.1
251_1 78 years, male 97.3
237_1 82 years, male 96.3
404_1 82 years, female 96.2
347_1 72 years, male 95.9
405_1 91 years, male 94.0
189_1 76 years, male 93.8
4_1 88 years, female 93.4
503_1 68 years, male 92.0
375_1 74 years, female 90.5
316_1 62 years, male 90.4
293_1 68 years, female 89.7
2_1 77 years, female 86.5
480_1 63 years, male 83.9
99_1 64 years, male 82.8
17_1 71 years, male 82.1
145_1 84 years, male 81.8
137_1 83 years, male 81.0
153_1 70 years, female 80.9
6_1 73 years, female 80.2
526_1 61 years, male 79.3
286_1 68 years, female 77.5
425_1 59 years, female 77.5
291_1 76 years, male 76.0
266_1 85 years, male 75.4
396_1 62 years, male 73.7
265_1 87 years, male 73.0
115_1 83 years, male 72.5
517_1 88 years, male 71.9
254_1 77 years, female 71.5
246_1 77 years, male 70.1
229_1 69 years, female 70.0
217_1 76 years, male 68.9
120_1 70 years, female 62.9
109_1 81 years, female 60.2
518_1 75 years, female 59.3
18_1 88 years, male 58.0
314_1 67 years, male 56.3
311_1 78 years, male 54.3
126_1 63 years, male 53.2
9_1 66 years, female 52.0
35_1 74 years, female 50.3
324_1 76 years, male 49.6
307_1 66 years, female 48.4
499_1 55 years, female 46.3
468_1 89 years, male 46.1
288_1 66 years, female 44.3
42_1 85 years, male 43.4
313_1 79 years, female 42.7
117_1 61 years, male 36.0
308_1 70 years, female 36.0
81_1 67 years, male 32.9
142_1 61 years, female 31.6
495_1 57 years, female 30.7
162_1 79 years, female 30.6
119_1 70 years, female 30.2
315_1 62 years, female 28.6
501_1 88 years, male 26.7
139_1 64 years, female 26.1
491_1 89 years, female 25.3
149_1 88 years, male 24.4
414_1 84 years, female 24.1
466_1 57 years, female 23.1
32_1 67 years, male 22.8
89_1 63 years, male 21.9
413_1 59 years, female 21.6
43_1 64 years, female 18.7
415_1 77 years, female 17.5
490_1 67 years, female 17.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 64.8
FF:10030-101E3 24-65 years, mixed 64.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.1
Pig sample Sample description nTPM
Retina
nTPM: 49.1
Samples: 4

Max nTPM: 58.2
Min nTPM: 36.1
Sample A Female 54.2
Sample B Female 47.9
Sample C Male 58.2
Sample D Male 36.1

RETINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.4
Rat sample Sample description nTPM
Retina
nTPM: 166.3
Samples: 4

Max nTPM: 184.4
Min nTPM: 152.6
Sample B 155.2
Sample A 152.6
Sample A 184.4
Sample A 173.2

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