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  • NHP2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:128.2 nTPM
HPA Brain:82.0 nTPM
GTEx:128.2 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:62.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 78.1
1981 Female, age 72, midline 99.3
2565 Male, age 75, midline 92.6
2048 Male, age 55, midline 69.2
2194 Female, age 79, both hemispheres 69.1
2816 Male, age 47, midline 60.2
Cervical spinal cord, dorsal horn
nTPM: 82.0
2296 Male, age 66, both hemispheres 99.0
2173 Female, age 72, unknown 97.0
2069 Male, age 47, both hemispheres 91.9
1877 Male, age 55, unknown 74.6
2721 Male, age 90, both hemispheres 65.2
2297 Male, age 75, both hemispheres 64.2
Cervical spinal cord, ventral horn
nTPM: 72.8
2098 Female, age 72, unknown 98.8
2809 Male, age 90, both hemispheres 84.7
2480 Male, age 75, both hemispheres 76.9
2295 Male, age 66, both hemispheres 63.7
2068 Male, age 55, unknown 62.4
2820 Female, age 79, both hemispheres 50.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.2
Samples: 204

Max nTPM: 206.7
Min nTPM: 69.4
Std nTPM: 24.5
Median nTPM: 125.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 206.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 201.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 199.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 187.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 187.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 184.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 183.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 181.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 178.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 172.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 171.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 171.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 169.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 165.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 165.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 165.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 164.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 162.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 162.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 162.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 161.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 161.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 161.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 159.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 159.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 157.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 157.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 157.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 156.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 155.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 153.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 153.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 152.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 152.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 151.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 150.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 149.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 149.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 148.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 148.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 148.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 147.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 147.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 146.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 146.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 146.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 143.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 143.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 142.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 142.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 142.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 142.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 141.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 141.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 141.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 140.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 140.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 140.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 139.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 139.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 139.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 139.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 139.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 138.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 138.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 138.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 138.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 137.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 136.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 134.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 134.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 133.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 133.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 133.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 133.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 132.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 132.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 132.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 131.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 131.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 131.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 130.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 130.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 130.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 130.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 129.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 129.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 129.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 129.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 128.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 128.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 127.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 127.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 127.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 127.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 127.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 126.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 126.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 126.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 126.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 126.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 126.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 125.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 125.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 124.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 124.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 123.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 123.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 122.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 122.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 122.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 122.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 122.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 120.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 120.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 120.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 119.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 119.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 119.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 119.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 119.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 118.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 118.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 118.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 118.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 117.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 117.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 117.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 117.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 117.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 117.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 116.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 116.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 116.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 115.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 115.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 114.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 114.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 114.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 113.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 113.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 113.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 113.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 113.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 113.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 113.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 113.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 112.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 112.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 112.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 111.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 111.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 111.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 111.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 111.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 110.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 110.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 109.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 109.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 109.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 108.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 108.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 108.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 105.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 105.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 105.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 105.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 105.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 105.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 105.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 105.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 104.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 103.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 103.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 103.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 102.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 101.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 101.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 101.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 99.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 98.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 98.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 98.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 97.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 97.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 96.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 93.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 93.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 92.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 92.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 92.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 89.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 89.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 87.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 84.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 82.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 81.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 69.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 59.7
FF:10181-103D1 60 years, female 81.4
FF:10159-103A6 76 years, female 38.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.5
Samples: 4

Max nTPM: 73.3
Min nTPM: 54.6
Sample A Female 54.6
Sample B Female 55.7
Sample C Male 73.3
Sample D Male 58.4
Ventral spinal cord
nTPM: 62.1
Samples: 4

Max nTPM: 69.5
Min nTPM: 51.3
Sample A Female 51.3
Sample B Female 62.1
Sample C Male 69.5
Sample D Male 65.5

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