MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.3 nTPM
HPA Brain:71.7 nTPM
GTEx:132.3 nTPM
FANTOM5:62.3 Scaled Tags Per Million
Pig:62.4 nTPM
Mouse:21.4 nTPM
Allen mouse:2.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.8
2586 Male, age 75, left hemisphere 73.0
2411 Female, age 72, unknown 67.4
2019 Male, age 18, unknown 66.7
1827 Male, age 72, unknown 66.0
1870 Female, age 42, unknown 63.4
2828 Female, age 72, unknown 59.8
2219 Male, age 76, both hemispheres 57.0
1833 Male, age 53, unknown 56.2
1830 Male, age 51, unknown 54.7
2666 Male, age 74, left hemisphere 53.9
Dorsal raphe nucleus
nTPM: 69.6
2298 Female, age 72, unknown 85.3
2047 Male, age 72, unknown 71.4
2750 Male, age 76, both hemispheres 68.5
1828 Male, age 53, unknown 65.8
2016 Female, age 72, unknown 56.8
Inferior colliculus
nTPM: 61.9
2097 Female, age 72, unknown 70.8
1890 Male, age 53, unknown 68.6
1848 Female, age 42, unknown 54.6
2849 Male, age 72, unknown 53.4
Median raphe nucleus
nTPM: 71.5
2220 Male, age 76, midline 71.5
Periaquaductal grey, anterior
nTPM: 68.2
2502 Female, age 75, unknown 69.5
1947 Male, age 18, unknown 69.1
1795 Male, age 51, unknown 65.9
Periaquaductal grey, dorsal
nTPM: 59.7
2850 Male, age 76, both hemispheres 63.4
1840 Male, age 53, unknown 62.3
1831 Male, age 72, unknown 57.7
2464 Female, age 72, unknown 55.5
Periaquaductal grey, lateral
nTPM: 59.9
2053 Male, age 18, unknown 63.2
2272 Male, age 74, both hemispheres 59.5
2140 Male, age 76, both hemispheres 56.9
Pretectal area
nTPM: 70.4
1816 Male, age 51, unknown 83.9
1944 Female, age 72, unknown 82.1
2007 Male, age 72, unknown 81.3
1817 Female, age 42, unknown 79.9
2667 Female, age 75, unknown 74.5
2273 Male, age 74, both hemispheres 70.8
1815 Male, age 53, unknown 66.8
2224 Female, age 72, unknown 65.5
2825 Male, age 18, unknown 57.2
2407 Male, age 75, both hemispheres 57.1
2316 Male, age 76, right hemisphere 54.8
Red nucleus
nTPM: 65.9
1821 Female, age 72, unknown 77.3
2725 Female, age 75, unknown 75.9
1865 Male, age 51, unknown 69.2
2503 Female, age 72, unknown 67.5
2785 Male, age 18, unknown 67.1
2769 Male, age 72, unknown 66.6
1904 Male, age 53, unknown 66.2
2823 Male, age 76, right hemisphere 62.9
2227 Male, age 72, unknown 62.3
1954 Female, age 42, unknown 62.2
2588 Male, age 74, left hemisphere 57.7
2584 Male, age 75, left hemisphere 55.3
Substantia nigra
nTPM: 71.7
1916 Female, age 42, unknown 96.6
1851 Male, age 51, unknown 78.5
1889 Female, age 72, unknown 75.8
1941 Male, age 53, unknown 74.0
2665 Male, age 74, both hemispheres 72.6
2699 Male, age 18, unknown 68.8
2241 Male, age 72, unknown 65.5
2583 Male, age 75, right hemisphere 64.6
2409 Female, age 72, unknown 64.4
2590 Female, age 75, unknown 56.1
Superior colliculus
nTPM: 63.5
1796 Male, age 53, unknown 70.6
2587 Male, age 74, left hemisphere 69.7
2261 Male, age 18, unknown 66.9
1913 Female, age 42, unknown 65.9
2087 Female, age 72, unknown 65.5
1995 Male, age 72, unknown 64.9
2668 Female, age 75, unknown 63.4
2664 Male, age 75, both hemispheres 58.4
1839 Male, age 51, unknown 55.3
1895 Male, age 76, right hemisphere 54.7
Ventral tegmental area
nTPM: 70.3
1915 Female, age 42, unknown 76.7
2410 Female, age 72, unknown 74.4
2218 Male, age 76, both hemispheres 74.2
2223 Female, age 72, unknown 69.1
1942 Male, age 51, unknown 66.2
2021 Male, age 53, unknown 61.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 132.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.3
Samples: 183

Max nTPM: 219.1
Min nTPM: 70.8
Std nTPM: 25.8
Median nTPM: 127.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 219.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 208.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 207.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 195.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 195.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 193.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 188.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 187.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 185.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 182.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 182.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.3
FF:10158-103A5 76 years, female 62.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.3
Samples: 4

Max nTPM: 78.3
Min nTPM: 42.3
Sample A Female 78.3
Sample B Female 46.3
Sample C Male 62.4
Sample D Male 42.3
Midbrain
nTPM: 62.5
Samples: 4

Max nTPM: 77.9
Min nTPM: 54.4
Sample A Female 77.9
Sample B Female 54.4
Sample C Male 62.9
Sample D Male 54.6
Periaqueductal gray
nTPM: 48.6
Samples: 3

Max nTPM: 56.8
Min nTPM: 42.8
Sample B Female 46.1
Sample C Male 56.8
Sample D Male 42.8
Superior colliculi
nTPM: 61.3
Samples: 4

Max nTPM: 70.9
Min nTPM: 54.1
Sample A Female 70.9
Sample B Female 54.1
Sample C Male 63.9
Sample D Male 56.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 26.8
Min nTPM: 16.4
Sample A Male 26.8
Sample B Male 16.4
Sample C Female 19.7
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
68563134 Antisense, RP_050125_01_B09, Mouse strain C57BL/6J (56 days, male) 2.1

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