HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.1 nTPM
HPA Brain:46.0 nTPM
GTEx:6.1 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:46.9 nTPM
Mouse:29.8 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 46.0
Sample id Sample description nTPM
Hippocampus
nTPM: 30.6
1898 Male, age 80, left hemisphere 36.4
1855 Male, age 76, left hemisphere 33.8
2621 Female, age 67, right hemisphere 31.9
1911 Female, age 85, right hemisphere 30.3
2148 Female, age 91, left hemisphere 27.6
2529 Female, age 94, left hemisphere 23.8
Dentate gyrus
nTPM: 32.4
2010 Male, age 76, both hemispheres 36.2
1927 Female, age 91, both hemispheres 35.0
2531 Female, age 67, both hemispheres 34.4
2246 Female, age 85, both hemispheres 33.3
2528 Male, age 74, both hemispheres 29.8
2530 Female, age 94, left hemisphere 26.0
Entorhinal gyrus
nTPM: 41.0
1938 Female, age 85, left hemisphere 59.4
2613 Female, age 94, left hemisphere 50.9
2764 Male, age 80, right hemisphere 41.4
1787 Male, age 76, left hemisphere 34.8
2686 Male, age 75, right hemisphere 32.7
2117 Female, age 91, right hemisphere 26.9
Hippocampus, CA1
nTPM: 37.2
2749 Male, age 80, left hemisphere 49.4
2045 Male, age 76, both hemispheres 41.3
1873 Female, age 85, both hemispheres 36.2
2527 Male, age 74, both hemispheres 31.9
2082 Female, age 91, right hemisphere 26.9
Hippocampus, CA2
nTPM: 29.6
1892 Male, age 76, both hemispheres 39.2
1963 Male, age 80, left hemisphere 31.1
2249 Male, age 74, both hemispheres 30.0
2437 Female, age 94, left hemisphere 29.0
2113 Female, age 91, right hemisphere 26.2
1940 Female, age 85, left hemisphere 22.2
Hippocampus, CA3
nTPM: 34.0
2137 Male, age 80, left hemisphere 46.6
1867 Male, age 76, both hemispheres 35.7
1891 Female, age 85, both hemispheres 33.4
2436 Male, age 74, both hemispheres 31.2
2861 Female, age 67, both hemispheres 28.8
2620 Female, age 94, left hemisphere 28.0
Parahippocampal cortex
nTPM: 38.6
1850 Male, age 80, both hemispheres 51.1
1933 Female, age 85, both hemispheres 46.2
1990 Female, age 91, right hemisphere 44.0
2532 Female, age 72, left hemisphere 39.9
2622 Female, age 67, right hemisphere 37.0
2250 Female, age 67, right hemisphere 36.3
2693 Female, age 94, both hemispheres 35.0
2692 Male, age 74, both hemispheres 34.2
2245 Female, age 91, both hemispheres 33.6
2018 Male, age 76, both hemispheres 28.5
Perirhinal gyrus
nTPM: 46.0
1847 Female, age 91, left hemisphere 63.9
1841 Female, age 85, right hemisphere 47.3
1794 Male, age 80, right hemisphere 43.3
2848 Male, age 76, right hemisphere 37.9
2521 Female, age 94, right hemisphere 37.5
Subiculum
nTPM: 34.1
1977 Female, age 85, both hemispheres 44.3
1901 Male, age 80, both hemispheres 36.9
2042 Male, age 76, both hemispheres 36.2
2438 Female, age 94, left hemisphere 34.7
2619 Male, age 74, both hemispheres 28.0
2729 Female, age 91, right hemisphere 24.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 6.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.1
Samples: 255

Max nTPM: 15.4
Min nTPM: 2.1
Std nTPM: 2.2
Median nTPM: 5.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 15.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 12.6
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 12.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 11.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 11.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 11.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 11.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 11.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 10.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 10.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 10.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.3
FF:10169-103B7 60 years, female 54.0
FF:10153-102I9 76 years, female 48.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 46.9
Pig sample Sample description nTPM
Subiculum
nTPM: 46.0
Samples: 4

Max nTPM: 59.1
Min nTPM: 38.7
Sample A Female 59.1
Sample B Female 38.7
Sample C Male 46.4
Sample D Male 39.8
Dorsal hippocampus
nTPM: 47.0
Samples: 4

Max nTPM: 52.4
Min nTPM: 43.2
Sample A Female 47.1
Sample B Female 52.4
Sample C Male 43.2
Sample D Male 45.1
Entorhinal cortex
nTPM: 39.9
Samples: 4

Max nTPM: 44.6
Min nTPM: 33.4
Sample A Female 43.4
Sample B Female 33.4
Sample C Male 38.1
Sample D Male 44.6
Ventral hippocampus
nTPM: 42.2
Samples: 4

Max nTPM: 46.7
Min nTPM: 35.3
Sample A Female 44.5
Sample B Female 35.3
Sample C Male 42.1
Sample D Male 46.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 29.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.8
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.6
Sample A Male 26.6
Sample B Male 32.3
Sample C Female 29.6
Sample D Female 30.6
Hippocampal formation
nTPM: 25.9
Samples: 4

Max nTPM: 27.6
Min nTPM: 24.4
Sample A Male 26.5
Sample B Male 25.0
Sample C Female 27.6
Sample D Female 24.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
69736292 Antisense, RP_050503_04_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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