On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3.7
nTPM
HPA Brain:
33.4
nTPM
GTEx:
3.7
nTPM
FANTOM5:
24.5
Scaled Tags Per Million
Macaque:
34.2
nTPM
Mouse:
17.8
nTPM
Rat:
21.1
nTPM
Pig:
42.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 22.7
1827
Male, age 72, unknown
30.4
2666
Male, age 74, left hemisphere
25.6
2411
Female, age 72, unknown
24.0
2219
Male, age 76, both hemispheres
23.9
1833
Male, age 53, unknown
23.6
1870
Female, age 42, unknown
23.0
2828
Female, age 72, unknown
22.9
2019
Male, age 18, unknown
18.9
1830
Male, age 51, unknown
18.5
2586
Male, age 75, left hemisphere
16.6
Dorsal raphe nucleus nTPM: 20.4
2750
Male, age 76, both hemispheres
23.9
2298
Female, age 72, unknown
22.8
1828
Male, age 53, unknown
20.6
2047
Male, age 72, unknown
19.1
2016
Female, age 72, unknown
15.5
Inferior colliculus nTPM: 21.7
1848
Female, age 42, unknown
25.3
2097
Female, age 72, unknown
24.2
2849
Male, age 72, unknown
21.0
1890
Male, age 53, unknown
16.2
Median raphe nucleus nTPM: 26.2
2220
Male, age 76, midline
26.2
Periaquaductal grey, anterior nTPM: 29.8
1947
Male, age 18, unknown
39.3
1795
Male, age 51, unknown
28.3
2502
Female, age 75, unknown
21.9
Periaquaductal grey, dorsal nTPM: 22.1
1840
Male, age 53, unknown
25.1
1831
Male, age 72, unknown
23.5
2464
Female, age 72, unknown
22.8
2850
Male, age 76, both hemispheres
17.0
Periaquaductal grey, lateral nTPM: 22.6
2053
Male, age 18, unknown
27.3
2272
Male, age 74, both hemispheres
23.4
2140
Male, age 76, both hemispheres
17.1
Pretectal area nTPM: 33.4
1816
Male, age 51, unknown
58.0
1944
Female, age 72, unknown
56.9
1815
Male, age 53, unknown
39.1
2007
Male, age 72, unknown
31.9
1817
Female, age 42, unknown
31.7
2667
Female, age 75, unknown
29.7
2224
Female, age 72, unknown
27.1
2825
Male, age 18, unknown
26.7
2316
Male, age 76, right hemisphere
24.2
2407
Male, age 75, both hemispheres
22.3
2273
Male, age 74, both hemispheres
19.7
Red nucleus nTPM: 20.9
2823
Male, age 76, right hemisphere
26.2
2503
Female, age 72, unknown
24.7
1821
Female, age 72, unknown
22.7
1904
Male, age 53, unknown
21.7
2584
Male, age 75, left hemisphere
21.6
2785
Male, age 18, unknown
21.2
1865
Male, age 51, unknown
20.7
1954
Female, age 42, unknown
20.4
2725
Female, age 75, unknown
20.4
2588
Male, age 74, left hemisphere
18.7
2769
Male, age 72, unknown
16.6
2227
Male, age 72, unknown
16.3
Substantia nigra nTPM: 21.4
1889
Female, age 72, unknown
28.6
2409
Female, age 72, unknown
27.2
2590
Female, age 75, unknown
25.9
2241
Male, age 72, unknown
23.6
2583
Male, age 75, right hemisphere
20.2
1851
Male, age 51, unknown
19.5
1941
Male, age 53, unknown
18.7
2665
Male, age 74, both hemispheres
18.5
1916
Female, age 42, unknown
18.1
2699
Male, age 18, unknown
13.8
Superior colliculus nTPM: 31.2
2087
Female, age 72, unknown
48.6
2261
Male, age 18, unknown
37.0
2668
Female, age 75, unknown
34.8
1913
Female, age 42, unknown
34.5
1895
Male, age 76, right hemisphere
32.8
1796
Male, age 53, unknown
32.4
1995
Male, age 72, unknown
30.9
2587
Male, age 74, left hemisphere
21.6
1839
Male, age 51, unknown
21.2
2664
Male, age 75, both hemispheres
18.3
Ventral tegmental area nTPM: 20.7
2410
Female, age 72, unknown
26.4
2218
Male, age 76, both hemispheres
24.4
1942
Male, age 51, unknown
20.8
1915
Female, age 42, unknown
17.9
2021
Male, age 53, unknown
17.3
2223
Female, age 72, unknown
17.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
3.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 3.7
Samples: 183
Max nTPM: 12.9
Min nTPM: 0.7
Std nTPM: 1.8
Median nTPM: 3.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
12.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
10.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
8.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
8.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
8.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
7.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
7.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
7.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
7.2
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
7.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
6.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
6.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
5.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
5.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
5.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
5.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
5.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
5.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
5.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
5.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
5.4
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
5.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
5.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
5.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
5.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
5.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
5.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
5.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
5.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
5.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
5.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
5.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
5.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
5.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
4.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
4.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
4.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
4.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
4.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
4.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
4.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
4.6
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
4.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
4.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
4.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
4.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
4.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
4.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
4.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
4.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
4.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
4.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
4.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
4.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
4.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
4.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
4.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
4.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
4.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
3.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
3.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
3.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
3.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
3.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
3.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
3.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
3.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
3.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
3.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
3.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
3.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
3.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
3.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
3.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
3.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
3.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
3.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
3.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
3.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
3.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
3.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
3.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
3.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
3.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
3.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
3.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
3.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
3.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
3.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
3.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
3.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
3.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
3.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
2.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
2.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
2.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
2.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
2.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
2.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
2.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
2.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.5
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
2.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
2.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
2.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
2.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1.2
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
0.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
0.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
0.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 34.2
Samples: 1
Max nTPM: 34.2
Min nTPM: 34.2
Sample A
34.2
Midbrain nTPM: 30.4
Samples: 1
Max nTPM: 30.4
Min nTPM: 30.4
Sample A
30.4
Superior colliculi nTPM: 30.5
Samples: 1
Max nTPM: 30.5
Min nTPM: 30.5
Sample A
30.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 30.4
Samples: 3
Max nTPM: 37.2
Min nTPM: 18.9
Sample A
Female
35.0
Sample B
Female
18.9
Sample C
Male
37.2
Midbrain nTPM: 42.2
Samples: 3
Max nTPM: 78.9
Min nTPM: 21.3
Sample B
Female
21.3
Sample C
Male
78.9
Sample D
Male
26.5
Periaqueductal gray nTPM: 18.0
Samples: 3
Max nTPM: 20.7
Min nTPM: 16.4
Sample B
Female
17.0
Sample C
Male
20.7
Sample D
Male
16.4
Superior colliculi nTPM: 27.8
Samples: 4
Max nTPM: 46.7
Min nTPM: 16.1
Sample A
Female
16.1
Sample B
Female
16.5
Sample C
Male
46.7
Sample D
Male
31.7
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 17.8
Samples: 4
Max nTPM: 19.9
Min nTPM: 14.6
Sample A
17.1
Sample B
14.6
Sample C
19.7
Sample D
19.9
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.1
Rat sample
Sample description
nTPM
Midbrain nTPM: 21.1
Samples: 4
Max nTPM: 22.4
Min nTPM: 20.1
Sample A
22.4
Sample A
20.6
Sample A
20.1
Sample A
21.3
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The Human Protein Atlas project is funded
