HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:116.3 nTPM
HPA Brain:193.8 nTPM
GTEx:116.3 nTPM
FANTOM5:212.3 Scaled Tags Per Million
Pig:125.8 nTPM
Mouse:6.6 nTPM
Allen mouse:5.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051300Antibody HPA054630
Glial cells Not detectedMedium
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 193.8
Sample id Sample description nTPM
Hippocampus
nTPM: 192.7
1911 Female, age 85, right hemisphere 238.4
2529 Female, age 94, left hemisphere 217.6
2148 Female, age 91, left hemisphere 196.8
1898 Male, age 80, left hemisphere 180.5
1855 Male, age 76, left hemisphere 169.1
2621 Female, age 67, right hemisphere 154.0
Dentate gyrus
nTPM: 180.1
2530 Female, age 94, left hemisphere 259.5
2528 Male, age 74, both hemispheres 229.6
2010 Male, age 76, both hemispheres 163.3
2531 Female, age 67, both hemispheres 157.8
2246 Female, age 85, both hemispheres 154.2
1927 Female, age 91, both hemispheres 116.1
Entorhinal gyrus
nTPM: 161.2
2117 Female, age 91, right hemisphere 255.0
2686 Male, age 75, right hemisphere 200.1
2764 Male, age 80, right hemisphere 159.5
2613 Female, age 94, left hemisphere 128.3
1938 Female, age 85, left hemisphere 119.9
1787 Male, age 76, left hemisphere 104.3
Hippocampus, CA1
nTPM: 141.9
1873 Female, age 85, both hemispheres 208.3
2527 Male, age 74, both hemispheres 174.2
2082 Female, age 91, right hemisphere 148.3
2749 Male, age 80, left hemisphere 91.7
2045 Male, age 76, both hemispheres 86.9
Hippocampus, CA2
nTPM: 161.4
1963 Male, age 80, left hemisphere 251.5
2113 Female, age 91, right hemisphere 170.7
2249 Male, age 74, both hemispheres 168.1
2437 Female, age 94, left hemisphere 160.4
1940 Female, age 85, left hemisphere 141.7
1892 Male, age 76, both hemispheres 76.2
Hippocampus, CA3
nTPM: 140.2
1891 Female, age 85, both hemispheres 235.0
2620 Female, age 94, left hemisphere 160.5
2861 Female, age 67, both hemispheres 158.0
1867 Male, age 76, both hemispheres 107.7
2436 Male, age 74, both hemispheres 102.1
2137 Male, age 80, left hemisphere 77.8
Parahippocampal cortex
nTPM: 112.7
2692 Male, age 74, both hemispheres 171.7
1990 Female, age 91, right hemisphere 139.5
2532 Female, age 72, left hemisphere 130.6
2245 Female, age 91, both hemispheres 118.8
2018 Male, age 76, both hemispheres 114.4
1850 Male, age 80, both hemispheres 109.6
2622 Female, age 67, right hemisphere 108.0
1933 Female, age 85, both hemispheres 96.8
2693 Female, age 94, both hemispheres 74.2
2250 Female, age 67, right hemisphere 63.1
Perirhinal gyrus
nTPM: 66.4
1794 Male, age 80, right hemisphere 73.0
1847 Female, age 91, left hemisphere 72.3
2848 Male, age 76, right hemisphere 68.2
2521 Female, age 94, right hemisphere 61.1
1841 Female, age 85, right hemisphere 57.3
Subiculum
nTPM: 193.8
2042 Male, age 76, both hemispheres 232.6
2729 Female, age 91, right hemisphere 212.4
1901 Male, age 80, both hemispheres 205.8
2438 Female, age 94, left hemisphere 193.4
1977 Female, age 85, both hemispheres 160.5
2619 Male, age 74, both hemispheres 157.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 116.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 116.3
Samples: 255

Max nTPM: 356.6
Min nTPM: 17.1
Std nTPM: 58.1
Median nTPM: 104.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 356.6
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 322.5
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 319.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 306.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 299.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 277.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 270.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 265.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 248.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 239.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 238.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 212.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 212.3
FF:10153-102I9 76 years, female 213.9
FF:10169-103B7 60 years, female 210.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 125.8
Pig sample Sample description nTPM
Subiculum
nTPM: 72.4
Samples: 4

Max nTPM: 83.2
Min nTPM: 63.5
Sample A Female 78.6
Sample B Female 83.2
Sample C Male 63.5
Sample D Male 64.3
Dorsal hippocampus
nTPM: 125.8
Samples: 4

Max nTPM: 172.8
Min nTPM: 60.1
Sample A Female 168.2
Sample B Female 102.0
Sample C Male 172.8
Sample D Male 60.1
Entorhinal cortex
nTPM: 59.4
Samples: 4

Max nTPM: 61.2
Min nTPM: 57.1
Sample A Female 59.5
Sample B Female 61.2
Sample C Male 57.1
Sample D Male 59.6
Ventral hippocampus
nTPM: 99.0
Samples: 4

Max nTPM: 119.5
Min nTPM: 68.0
Sample A Female 96.8
Sample B Female 68.0
Sample C Male 111.6
Sample D Male 119.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 6.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.6
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.3
Sample A Male 8.5
Sample B Male 6.4
Sample C Female 6.3
Sample D Female 5.3
Hippocampal formation
nTPM: 6.4
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.3
Sample A Male 6.2
Sample B Male 5.3
Sample C Female 6.2
Sample D Female 7.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.6
74511880 Antisense, RP_051121_04_A01, Mouse strain C57BL/6J (56 days, male) 6.9
68667288 Antisense, RP_050201_02_A02, Mouse strain C57BL/6J (56 days, male) 4.3

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