MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.8 nTPM
HPA Brain:302.4 nTPM
GTEx:132.8 nTPM
FANTOM5:327.1 Scaled Tags Per Million
Pig:184.6 nTPM
Mouse:9.7 nTPM
Allen mouse:6.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 302.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 276.1
2828 Female, age 72, unknown 375.8
2586 Male, age 75, left hemisphere 326.2
2666 Male, age 74, left hemisphere 300.0
1830 Male, age 51, unknown 278.5
1870 Female, age 42, unknown 271.3
1833 Male, age 53, unknown 267.3
2411 Female, age 72, unknown 264.3
1827 Male, age 72, unknown 238.3
2019 Male, age 18, unknown 226.3
2219 Male, age 76, both hemispheres 212.8
Dorsal raphe nucleus
nTPM: 227.7
2016 Female, age 72, unknown 302.9
2750 Male, age 76, both hemispheres 264.7
1828 Male, age 53, unknown 220.2
2047 Male, age 72, unknown 182.4
2298 Female, age 72, unknown 168.3
Inferior colliculus
nTPM: 180.4
2849 Male, age 72, unknown 213.3
1848 Female, age 42, unknown 201.2
1890 Male, age 53, unknown 173.3
2097 Female, age 72, unknown 133.9
Median raphe nucleus
nTPM: 138.6
2220 Male, age 76, midline 138.6
Periaquaductal grey, anterior
nTPM: 210.2
2502 Female, age 75, unknown 236.2
1795 Male, age 51, unknown 208.1
1947 Male, age 18, unknown 186.4
Periaquaductal grey, dorsal
nTPM: 208.1
1831 Male, age 72, unknown 252.1
2464 Female, age 72, unknown 224.2
2850 Male, age 76, both hemispheres 183.3
1840 Male, age 53, unknown 172.9
Periaquaductal grey, lateral
nTPM: 235.8
2053 Male, age 18, unknown 300.9
2272 Male, age 74, both hemispheres 204.9
2140 Male, age 76, both hemispheres 201.6
Pretectal area
nTPM: 208.4
2316 Male, age 76, right hemisphere 275.2
1815 Male, age 53, unknown 270.1
2825 Male, age 18, unknown 253.6
2407 Male, age 75, both hemispheres 234.5
2273 Male, age 74, both hemispheres 205.6
2667 Female, age 75, unknown 200.1
1817 Female, age 42, unknown 192.8
1944 Female, age 72, unknown 177.3
2224 Female, age 72, unknown 172.8
2007 Male, age 72, unknown 166.1
1816 Male, age 51, unknown 144.0
Red nucleus
nTPM: 302.4
2588 Male, age 74, left hemisphere 349.6
1865 Male, age 51, unknown 347.7
2503 Female, age 72, unknown 341.0
1904 Male, age 53, unknown 330.8
2823 Male, age 76, right hemisphere 324.1
2769 Male, age 72, unknown 314.9
2227 Male, age 72, unknown 300.7
2785 Male, age 18, unknown 270.3
1954 Female, age 42, unknown 268.8
1821 Female, age 72, unknown 266.8
2725 Female, age 75, unknown 258.9
2584 Male, age 75, left hemisphere 255.7
Substantia nigra
nTPM: 204.2
2699 Male, age 18, unknown 264.6
2583 Male, age 75, right hemisphere 248.3
2665 Male, age 74, both hemispheres 236.0
2409 Female, age 72, unknown 219.7
1851 Male, age 51, unknown 215.1
2590 Female, age 75, unknown 213.0
1941 Male, age 53, unknown 178.4
1889 Female, age 72, unknown 175.8
2241 Male, age 72, unknown 147.7
1916 Female, age 42, unknown 143.0
Superior colliculus
nTPM: 261.8
1995 Male, age 72, unknown 383.7
1913 Female, age 42, unknown 353.2
2587 Male, age 74, left hemisphere 268.5
2664 Male, age 75, both hemispheres 258.7
1839 Male, age 51, unknown 255.6
2668 Female, age 75, unknown 251.9
1895 Male, age 76, right hemisphere 242.0
1796 Male, age 53, unknown 229.6
2087 Female, age 72, unknown 195.0
2261 Male, age 18, unknown 180.0
Ventral tegmental area
nTPM: 218.9
1942 Male, age 51, unknown 243.9
2410 Female, age 72, unknown 243.5
2021 Male, age 53, unknown 233.9
2223 Female, age 72, unknown 211.5
1915 Female, age 42, unknown 193.9
2218 Male, age 76, both hemispheres 186.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 132.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.8
Samples: 183

Max nTPM: 419.0
Min nTPM: 18.3
Std nTPM: 63.5
Median nTPM: 122.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 419.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 375.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 295.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 284.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 273.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 272.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 272.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 264.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 254.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 249.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 238.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 327.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 327.1
FF:10158-103A5 76 years, female 327.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 184.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 184.6
Samples: 4

Max nTPM: 299.4
Min nTPM: 126.7
Sample A Female 158.9
Sample B Female 126.7
Sample C Male 153.2
Sample D Male 299.4
Midbrain
nTPM: 169.4
Samples: 4

Max nTPM: 289.3
Min nTPM: 101.3
Sample A Female 289.3
Sample B Female 181.9
Sample C Male 101.3
Sample D Male 105.1
Periaqueductal gray
nTPM: 131.7
Samples: 3

Max nTPM: 151.9
Min nTPM: 106.7
Sample B Female 151.9
Sample C Male 106.7
Sample D Male 136.6
Superior colliculi
nTPM: 126.9
Samples: 4

Max nTPM: 178.6
Min nTPM: 64.0
Sample A Female 130.1
Sample B Female 64.0
Sample C Male 134.8
Sample D Male 178.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.6
Sample A Male 7.8
Sample B Male 7.6
Sample C Female 10.9
Sample D Female 12.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
74511880 Antisense, RP_051121_04_A01, Mouse strain C57BL/6J (56 days, male) 9.5
68667288 Antisense, RP_050201_02_A02, Mouse strain C57BL/6J (56 days, male) 3.7

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