BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.8 nTPM
HPA Brain:303.5 nTPM
GTEx:132.8 nTPM
FANTOM5:327.1 Scaled Tags Per Million
Macaque:190.0 nTPM
Mouse:23.8 nTPM
Rat:29.1 nTPM
Pig:147.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 303.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 276.8
2828 Female, age 72, unknown 377.1
2586 Male, age 75, left hemisphere 324.3
2666 Male, age 74, left hemisphere 301.4
1830 Male, age 51, unknown 279.3
1870 Female, age 42, unknown 272.1
1833 Male, age 53, unknown 268.3
2411 Female, age 72, unknown 265.4
1827 Male, age 72, unknown 239.1
2019 Male, age 18, unknown 227.0
2219 Male, age 76, both hemispheres 214.4
Dorsal raphe nucleus
nTPM: 228.8
2016 Female, age 72, unknown 304.1
2750 Male, age 76, both hemispheres 266.7
1828 Male, age 53, unknown 221.0
2047 Male, age 72, unknown 183.0
2298 Female, age 72, unknown 169.0
Inferior colliculus
nTPM: 181.1
2849 Male, age 72, unknown 214.1
1848 Female, age 42, unknown 201.9
1890 Male, age 53, unknown 173.9
2097 Female, age 72, unknown 134.4
Median raphe nucleus
nTPM: 139.6
2220 Male, age 76, midline 139.6
Periaquaductal grey, anterior
nTPM: 210.9
2502 Female, age 75, unknown 236.9
1795 Male, age 51, unknown 208.9
1947 Male, age 18, unknown 187.0
Periaquaductal grey, dorsal
nTPM: 209.1
1831 Male, age 72, unknown 253.0
2464 Female, age 72, unknown 225.1
2850 Male, age 76, both hemispheres 184.8
1840 Male, age 53, unknown 173.5
Periaquaductal grey, lateral
nTPM: 237.0
2053 Male, age 18, unknown 301.9
2272 Male, age 74, both hemispheres 206.0
2140 Male, age 76, both hemispheres 203.2
Pretectal area
nTPM: 209.0
2316 Male, age 76, right hemisphere 277.3
1815 Male, age 53, unknown 270.9
2825 Male, age 18, unknown 254.5
2407 Male, age 75, both hemispheres 233.2
2273 Male, age 74, both hemispheres 206.7
2667 Female, age 75, unknown 200.7
1817 Female, age 42, unknown 193.5
1944 Female, age 72, unknown 177.8
2224 Female, age 72, unknown 173.6
2007 Male, age 72, unknown 166.7
1816 Male, age 51, unknown 144.4
Red nucleus
nTPM: 303.5
2588 Male, age 74, left hemisphere 351.1
1865 Male, age 51, unknown 348.8
2503 Female, age 72, unknown 342.2
1904 Male, age 53, unknown 332.2
2823 Male, age 76, right hemisphere 326.6
2769 Male, age 72, unknown 316.0
2227 Male, age 72, unknown 301.7
2785 Male, age 18, unknown 271.3
1954 Female, age 42, unknown 269.7
1821 Female, age 72, unknown 267.7
2725 Female, age 75, unknown 259.8
2584 Male, age 75, left hemisphere 254.3
Substantia nigra
nTPM: 204.7
2699 Male, age 18, unknown 265.5
2583 Male, age 75, right hemisphere 246.8
2665 Male, age 74, both hemispheres 237.3
2409 Female, age 72, unknown 220.5
1851 Male, age 51, unknown 215.8
2590 Female, age 75, unknown 213.6
1941 Male, age 53, unknown 179.0
1889 Female, age 72, unknown 176.5
2241 Male, age 72, unknown 148.2
1916 Female, age 42, unknown 143.5
Superior colliculus
nTPM: 262.7
1995 Male, age 72, unknown 385.1
1913 Female, age 42, unknown 354.5
2587 Male, age 74, left hemisphere 269.8
2664 Male, age 75, both hemispheres 257.3
1839 Male, age 51, unknown 256.4
2668 Female, age 75, unknown 252.7
1895 Male, age 76, right hemisphere 243.8
1796 Male, age 53, unknown 230.5
2087 Female, age 72, unknown 195.7
2261 Male, age 18, unknown 180.6
Ventral tegmental area
nTPM: 219.8
1942 Male, age 51, unknown 244.8
2410 Female, age 72, unknown 244.6
2021 Male, age 53, unknown 234.8
2223 Female, age 72, unknown 212.2
1915 Female, age 42, unknown 194.5
2218 Male, age 76, both hemispheres 187.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 132.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.8
Samples: 183

Max nTPM: 419.0
Min nTPM: 18.3
Std nTPM: 63.5
Median nTPM: 122.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 419.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 375.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 295.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 284.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 273.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 272.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 272.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 264.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 254.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 249.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 238.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 327.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 327.1
FF:10158-103A5 76 years, female 327.1

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 190.0
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 190.0
Samples: 1

Max nTPM: 190.0
Min nTPM: 190.0
Sample A 190.0
Midbrain
nTPM: 118.8
Samples: 1

Max nTPM: 118.8
Min nTPM: 118.8
Sample A 118.8
Superior colliculi
nTPM: 178.1
Samples: 1

Max nTPM: 178.1
Min nTPM: 178.1
Sample A 178.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 147.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 147.1
Samples: 3

Max nTPM: 160.0
Min nTPM: 127.2
Sample A Female 160.0
Sample B Female 127.2
Sample C Male 154.0
Midbrain
nTPM: 129.8
Samples: 3

Max nTPM: 182.6
Min nTPM: 101.6
Sample B Female 182.6
Sample C Male 101.6
Sample D Male 105.3
Periaqueductal gray
nTPM: 132.0
Samples: 3

Max nTPM: 152.3
Min nTPM: 106.8
Sample B Female 152.3
Sample C Male 106.8
Sample D Male 136.8
Superior colliculi
nTPM: 127.6
Samples: 4

Max nTPM: 179.5
Min nTPM: 64.3
Sample A Female 131.0
Sample B Female 64.3
Sample C Male 135.5
Sample D Male 179.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 25.7
Min nTPM: 21.3
Sample A 21.3
Sample B 23.2
Sample C 25.7
Sample D 25.1

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 29.1
Rat sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 32.0
Min nTPM: 26.8
Sample A 29.4
Sample A 32.0
Sample A 26.8
Sample A 28.3

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