A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
9.9
nTPM
Schmiedel:
45.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
Memory B-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1017
0.5
P10809_1025
0.1
P10809_1044
0.0
P10809_1063
0.5
P10809_1092
0.6
P10809_1105
0.4
Naive B-cell nTPM: 0.3
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.1
P10809_1011
0.2
P10809_1029
0.2
P10809_1048
0.8
P10809_1067
0.4
P10809_1091
0.2
P10809_1104
0.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 5.3
Samples: 4
Max nTPM: 7.1
Min nTPM: 3.1
RHH5310_R3677
3.1
RHH5218_R3590
7.1
RHH5247_R3619
5.4
RHH5276_R3648
5.5
Naive B-cell nTPM: 6.1
Samples: 4
Max nTPM: 8.6
Min nTPM: 4.7
RHH5308_R3675
6.0
RHH5216_R3588
5.2
RHH5245_R3617
8.6
RHH5274_R3646
4.7
Non-switched memory B-cell nTPM: 9.9
Samples: 4
Max nTPM: 12.6
Min nTPM: 6.4
RHH5309_R3676
6.4
RHH5217_R3589
8.3
RHH5246_R3618
12.3
RHH5275_R3647
12.6
Plasmablast nTPM: 4.4
Samples: 4
Max nTPM: 6.6
Min nTPM: 1.5
RHH5312_R3679
6.6
RHH5220_R3592
1.5
RHH5249_R3621
4.2
RHH5278_R3650
5.4
Switched memory B-cell nTPM: 5.5
Samples: 4
Max nTPM: 6.5
Min nTPM: 3.7
RHH5311_R3678
3.7
RHH5219_R3591
6.5
RHH5248_R3620
5.9
RHH5277_R3649
6.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.0
Schmiedel sample id
TPM
Naive B-cell TPM: 45.0
Samples: 91
Max TPM: 75.9
Min TPM: 26.9
B_CELL_NAIVE_1
75.9
B_CELL_NAIVE_2
69.6
B_CELL_NAIVE_3
67.1
B_CELL_NAIVE_4
65.0
B_CELL_NAIVE_5
64.1
B_CELL_NAIVE_6
60.8
B_CELL_NAIVE_7
60.4
B_CELL_NAIVE_8
60.2
B_CELL_NAIVE_9
60.1
B_CELL_NAIVE_10
58.1
B_CELL_NAIVE_11
56.4
B_CELL_NAIVE_12
52.5
B_CELL_NAIVE_13
52.0
B_CELL_NAIVE_14
51.5
B_CELL_NAIVE_15
51.0
B_CELL_NAIVE_16
50.2
B_CELL_NAIVE_17
50.2
B_CELL_NAIVE_18
50.2
B_CELL_NAIVE_19
50.0
B_CELL_NAIVE_20
49.9
B_CELL_NAIVE_21
49.6
B_CELL_NAIVE_22
49.1
B_CELL_NAIVE_23
48.9
B_CELL_NAIVE_24
48.3
B_CELL_NAIVE_25
47.9
B_CELL_NAIVE_26
47.9
B_CELL_NAIVE_27
47.7
B_CELL_NAIVE_28
46.8
B_CELL_NAIVE_29
46.7
B_CELL_NAIVE_30
46.0
B_CELL_NAIVE_31
45.9
B_CELL_NAIVE_32
45.6
B_CELL_NAIVE_33
45.5
B_CELL_NAIVE_34
45.1
B_CELL_NAIVE_35
45.0
B_CELL_NAIVE_36
44.8
B_CELL_NAIVE_37
44.8
B_CELL_NAIVE_38
44.7
B_CELL_NAIVE_39
44.6
B_CELL_NAIVE_40
44.5
B_CELL_NAIVE_41
44.5
B_CELL_NAIVE_42
44.4
B_CELL_NAIVE_43
44.4
B_CELL_NAIVE_44
44.4
B_CELL_NAIVE_45
44.2
B_CELL_NAIVE_46
44.1
B_CELL_NAIVE_47
43.9
B_CELL_NAIVE_48
43.5
B_CELL_NAIVE_49
43.3
B_CELL_NAIVE_50
43.3
B_CELL_NAIVE_51
43.2
B_CELL_NAIVE_52
43.2
B_CELL_NAIVE_53
43.1
B_CELL_NAIVE_54
42.8
B_CELL_NAIVE_55
42.6
B_CELL_NAIVE_56
41.9
B_CELL_NAIVE_57
41.8
B_CELL_NAIVE_58
41.7
B_CELL_NAIVE_59
41.6
B_CELL_NAIVE_60
41.2
B_CELL_NAIVE_61
40.9
B_CELL_NAIVE_62
40.9
B_CELL_NAIVE_63
40.8
B_CELL_NAIVE_64
40.7
B_CELL_NAIVE_65
40.2
B_CELL_NAIVE_66
39.7
B_CELL_NAIVE_67
39.5
B_CELL_NAIVE_68
39.4
B_CELL_NAIVE_69
39.3
B_CELL_NAIVE_70
39.2
B_CELL_NAIVE_71
38.9
B_CELL_NAIVE_72
38.9
B_CELL_NAIVE_73
38.7
B_CELL_NAIVE_74
38.6
B_CELL_NAIVE_75
38.2
B_CELL_NAIVE_76
38.1
B_CELL_NAIVE_77
37.3
B_CELL_NAIVE_78
36.7
B_CELL_NAIVE_79
36.6
B_CELL_NAIVE_80
36.6
B_CELL_NAIVE_81
36.6
B_CELL_NAIVE_82
36.4
B_CELL_NAIVE_83
36.3
B_CELL_NAIVE_84
35.6
B_CELL_NAIVE_85
35.4
B_CELL_NAIVE_86
33.8
B_CELL_NAIVE_87
33.6
B_CELL_NAIVE_88
32.5
B_CELL_NAIVE_89
30.6
B_CELL_NAIVE_90
28.1
B_CELL_NAIVE_91
26.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
