HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:43.2 nTPM
HPA Brain:30.9 nTPM
GTEx:43.2 nTPM
FANTOM5:179.1 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:72.7 nTPM
Allen mouse:8.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA063084
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 30.9
Sample id Sample description nTPM
Hippocampus
nTPM: 30.6
1898 Male, age 80, left hemisphere 38.4
2148 Female, age 91, left hemisphere 32.0
1911 Female, age 85, right hemisphere 30.3
1855 Male, age 76, left hemisphere 30.2
2529 Female, age 94, left hemisphere 27.3
2621 Female, age 67, right hemisphere 25.6
Dentate gyrus
nTPM: 27.0
1927 Female, age 91, both hemispheres 35.0
2528 Male, age 74, both hemispheres 31.4
2246 Female, age 85, both hemispheres 30.4
2010 Male, age 76, both hemispheres 29.8
2530 Female, age 94, left hemisphere 20.3
2531 Female, age 67, both hemispheres 15.2
Entorhinal gyrus
nTPM: 24.1
2117 Female, age 91, right hemisphere 32.3
1938 Female, age 85, left hemisphere 28.6
1787 Male, age 76, left hemisphere 27.1
2764 Male, age 80, right hemisphere 20.9
2613 Female, age 94, left hemisphere 18.7
2686 Male, age 75, right hemisphere 17.3
Hippocampus, CA1
nTPM: 30.8
2527 Male, age 74, both hemispheres 35.4
1873 Female, age 85, both hemispheres 32.4
2749 Male, age 80, left hemisphere 32.0
2045 Male, age 76, both hemispheres 29.1
2082 Female, age 91, right hemisphere 25.0
Hippocampus, CA2
nTPM: 30.9
1892 Male, age 76, both hemispheres 38.4
2249 Male, age 74, both hemispheres 36.1
1963 Male, age 80, left hemisphere 32.6
1940 Female, age 85, left hemisphere 29.7
2113 Female, age 91, right hemisphere 26.3
2437 Female, age 94, left hemisphere 22.4
Hippocampus, CA3
nTPM: 29.3
2436 Male, age 74, both hemispheres 41.4
1867 Male, age 76, both hemispheres 36.4
1891 Female, age 85, both hemispheres 32.4
2137 Male, age 80, left hemisphere 26.5
2620 Female, age 94, left hemisphere 22.0
2861 Female, age 67, both hemispheres 16.9
Parahippocampal cortex
nTPM: 26.3
2250 Female, age 67, right hemisphere 33.9
1990 Female, age 91, right hemisphere 29.6
2018 Male, age 76, both hemispheres 28.6
1850 Male, age 80, both hemispheres 28.3
1933 Female, age 85, both hemispheres 28.0
2245 Female, age 91, both hemispheres 24.5
2693 Female, age 94, both hemispheres 24.1
2692 Male, age 74, both hemispheres 23.4
2622 Female, age 67, right hemisphere 22.4
2532 Female, age 72, left hemisphere 20.4
Perirhinal gyrus
nTPM: 29.9
1847 Female, age 91, left hemisphere 34.0
1841 Female, age 85, right hemisphere 31.6
2521 Female, age 94, right hemisphere 30.8
1794 Male, age 80, right hemisphere 29.7
2848 Male, age 76, right hemisphere 23.3
Subiculum
nTPM: 26.9
2729 Female, age 91, right hemisphere 33.5
1977 Female, age 85, both hemispheres 27.8
1901 Male, age 80, both hemispheres 26.2
2619 Male, age 74, both hemispheres 26.2
2438 Female, age 94, left hemisphere 24.5
2042 Male, age 76, both hemispheres 22.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 43.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.2
Samples: 255

Max nTPM: 104.1
Min nTPM: 18.2
Std nTPM: 10.6
Median nTPM: 42.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 104.1
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 73.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 72.2
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 70.6
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 66.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 66.5
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 66.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 64.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 63.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 63.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 62.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 179.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 179.1
FF:10169-103B7 60 years, female 232.6
FF:10153-102I9 76 years, female 125.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 48.9
Pig sample Sample description nTPM
Subiculum
nTPM: 48.7
Samples: 4

Max nTPM: 58.5
Min nTPM: 42.0
Sample A Female 58.5
Sample B Female 49.9
Sample C Male 44.5
Sample D Male 42.0
Dorsal hippocampus
nTPM: 49.0
Samples: 4

Max nTPM: 52.9
Min nTPM: 44.5
Sample A Female 52.9
Sample B Female 46.8
Sample C Male 51.6
Sample D Male 44.5
Entorhinal cortex
nTPM: 48.8
Samples: 4

Max nTPM: 54.3
Min nTPM: 45.1
Sample A Female 47.4
Sample B Female 54.3
Sample C Male 48.2
Sample D Male 45.1
Ventral hippocampus
nTPM: 47.2
Samples: 4

Max nTPM: 54.4
Min nTPM: 42.6
Sample A Female 54.4
Sample B Female 42.8
Sample C Male 49.0
Sample D Male 42.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 72.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.9
Samples: 4

Max nTPM: 66.0
Min nTPM: 59.0
Sample A Male 65.5
Sample B Male 65.1
Sample C Female 66.0
Sample D Female 59.0
Hippocampal formation
nTPM: 72.7
Samples: 4

Max nTPM: 78.5
Min nTPM: 69.5
Sample A Male 78.5
Sample B Male 70.1
Sample C Female 69.5
Sample D Female 72.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.0
69549646 Antisense, RP_050310_01_D10, Mouse strain C57BL/6J (56 days, male) 8.1
74819681 Antisense, RP_060315_02_G11, Mouse strain C57BL/6J (56 days, male) 7.8

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