MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.3 nTPM
HPA Brain:39.7 nTPM
GTEx:55.3 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Pig:51.5 nTPM
Mouse:73.0 nTPM
Allen mouse:6.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
2586 Male, age 75, left hemisphere 43.7
1827 Male, age 72, unknown 33.1
2411 Female, age 72, unknown 33.1
1870 Female, age 42, unknown 32.9
2828 Female, age 72, unknown 31.8
2019 Male, age 18, unknown 28.3
2666 Male, age 74, left hemisphere 27.8
2219 Male, age 76, both hemispheres 27.4
1833 Male, age 53, unknown 27.3
1830 Male, age 51, unknown 25.5
Dorsal raphe nucleus
nTPM: 39.7
2298 Female, age 72, unknown 53.3
2016 Female, age 72, unknown 39.5
2047 Male, age 72, unknown 39.4
1828 Male, age 53, unknown 36.7
2750 Male, age 76, both hemispheres 29.5
Inferior colliculus
nTPM: 38.1
2097 Female, age 72, unknown 48.2
1890 Male, age 53, unknown 36.6
1848 Female, age 42, unknown 36.2
2849 Male, age 72, unknown 31.2
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 37.5
1947 Male, age 18, unknown 39.7
1795 Male, age 51, unknown 37.8
2502 Female, age 75, unknown 35.1
Periaquaductal grey, dorsal
nTPM: 35.1
1840 Male, age 53, unknown 41.1
2850 Male, age 76, both hemispheres 35.9
2464 Female, age 72, unknown 33.4
1831 Male, age 72, unknown 29.9
Periaquaductal grey, lateral
nTPM: 33.3
2272 Male, age 74, both hemispheres 36.6
2053 Male, age 18, unknown 32.8
2140 Male, age 76, both hemispheres 30.6
Pretectal area
nTPM: 37.4
1816 Male, age 51, unknown 43.6
1817 Female, age 42, unknown 42.1
2224 Female, age 72, unknown 42.0
1944 Female, age 72, unknown 41.0
2273 Male, age 74, both hemispheres 41.0
2007 Male, age 72, unknown 39.8
1815 Male, age 53, unknown 38.3
2667 Female, age 75, unknown 37.7
2825 Male, age 18, unknown 33.4
2316 Male, age 76, right hemisphere 30.8
2407 Male, age 75, both hemispheres 21.2
Red nucleus
nTPM: 30.7
1821 Female, age 72, unknown 38.4
2503 Female, age 72, unknown 38.1
2725 Female, age 75, unknown 35.0
1954 Female, age 42, unknown 31.8
2769 Male, age 72, unknown 30.2
2823 Male, age 76, right hemisphere 30.0
1904 Male, age 53, unknown 29.3
2227 Male, age 72, unknown 29.0
1865 Male, age 51, unknown 27.8
2785 Male, age 18, unknown 27.7
2588 Male, age 74, left hemisphere 26.2
2584 Male, age 75, left hemisphere 25.0
Substantia nigra
nTPM: 36.9
2241 Male, age 72, unknown 46.4
1889 Female, age 72, unknown 41.3
1916 Female, age 42, unknown 41.2
1851 Male, age 51, unknown 39.9
2409 Female, age 72, unknown 39.2
2699 Male, age 18, unknown 37.7
1941 Male, age 53, unknown 35.7
2590 Female, age 75, unknown 32.1
2665 Male, age 74, both hemispheres 28.5
2583 Male, age 75, right hemisphere 27.0
Superior colliculus
nTPM: 33.8
2261 Male, age 18, unknown 40.6
2087 Female, age 72, unknown 39.1
1796 Male, age 53, unknown 35.8
2668 Female, age 75, unknown 34.6
2587 Male, age 74, left hemisphere 34.1
1995 Male, age 72, unknown 33.2
1839 Male, age 51, unknown 32.0
1895 Male, age 76, right hemisphere 30.0
2664 Male, age 75, both hemispheres 29.3
1913 Female, age 42, unknown 29.1
Ventral tegmental area
nTPM: 34.2
2410 Female, age 72, unknown 38.7
1915 Female, age 42, unknown 36.3
1942 Male, age 51, unknown 35.8
2021 Male, age 53, unknown 33.8
2218 Male, age 76, both hemispheres 32.3
2223 Female, age 72, unknown 28.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 55.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.3
Samples: 183

Max nTPM: 110.6
Min nTPM: 22.4
Std nTPM: 17.2
Median nTPM: 54.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 110.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 109.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 108.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 99.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 96.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 96.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 94.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 92.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 89.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 88.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 88.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.6
FF:10158-103A5 76 years, female 117.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.5
Samples: 4

Max nTPM: 49.9
Min nTPM: 49.0
Sample A Female 49.5
Sample B Female 49.4
Sample C Male 49.0
Sample D Male 49.9
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 56.3
Min nTPM: 49.1
Sample A Female 49.1
Sample B Female 49.4
Sample C Male 56.3
Sample D Male 49.2
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 49.2
Min nTPM: 45.3
Sample B Female 49.2
Sample C Male 48.9
Sample D Male 45.3
Superior colliculi
nTPM: 51.5
Samples: 4

Max nTPM: 55.5
Min nTPM: 48.2
Sample A Female 50.1
Sample B Female 48.2
Sample C Male 55.5
Sample D Male 52.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 74.2
Min nTPM: 70.8
Sample A Male 74.1
Sample B Male 74.2
Sample C Female 70.8
Sample D Female 72.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
69549646 Antisense, RP_050310_01_D10, Mouse strain C57BL/6J (56 days, male) 6.6
74819681 Antisense, RP_060315_02_G11, Mouse strain C57BL/6J (56 days, male) 6.3

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