MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1555.0 nTPM
HPA Brain:500.8 nTPM
GTEx:1555.0 nTPM
FANTOM5:46.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 500.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 438.5
1870 Female, age 42, unknown 533.3
2411 Female, age 72, unknown 521.8
2586 Male, age 75, left hemisphere 477.1
2828 Female, age 72, unknown 472.6
2666 Male, age 74, left hemisphere 445.2
2019 Male, age 18, unknown 426.2
1830 Male, age 51, unknown 408.7
1833 Male, age 53, unknown 407.2
1827 Male, age 72, unknown 398.5
2219 Male, age 76, both hemispheres 294.0
Dorsal raphe nucleus
nTPM: 486.2
2298 Female, age 72, unknown 615.6
2016 Female, age 72, unknown 489.9
2750 Male, age 76, both hemispheres 478.8
1828 Male, age 53, unknown 441.4
2047 Male, age 72, unknown 405.3
Inferior colliculus
nTPM: 428.7
2097 Female, age 72, unknown 494.8
1890 Male, age 53, unknown 450.9
1848 Female, age 42, unknown 391.5
2849 Male, age 72, unknown 377.4
Median raphe nucleus
nTPM: 429.5
2220 Male, age 76, midline 429.5
Periaquaductal grey, anterior
nTPM: 485.3
2502 Female, age 75, unknown 564.7
1947 Male, age 18, unknown 455.8
1795 Male, age 51, unknown 435.3
Periaquaductal grey, dorsal
nTPM: 411.7
1840 Male, age 53, unknown 442.5
1831 Male, age 72, unknown 441.4
2464 Female, age 72, unknown 416.0
2850 Male, age 76, both hemispheres 346.9
Periaquaductal grey, lateral
nTPM: 403.8
2053 Male, age 18, unknown 465.2
2140 Male, age 76, both hemispheres 388.5
2272 Male, age 74, both hemispheres 357.7
Pretectal area
nTPM: 397.0
2316 Male, age 76, right hemisphere 476.7
2224 Female, age 72, unknown 469.4
2825 Male, age 18, unknown 434.0
2007 Male, age 72, unknown 413.4
1817 Female, age 42, unknown 398.5
1815 Male, age 53, unknown 391.0
2273 Male, age 74, both hemispheres 386.3
1816 Male, age 51, unknown 363.9
2667 Female, age 75, unknown 358.8
2407 Male, age 75, both hemispheres 356.3
1944 Female, age 72, unknown 319.1
Red nucleus
nTPM: 499.9
2503 Female, age 72, unknown 626.6
1821 Female, age 72, unknown 559.3
1865 Male, age 51, unknown 542.6
2769 Male, age 72, unknown 539.2
1904 Male, age 53, unknown 532.6
2227 Male, age 72, unknown 518.7
2588 Male, age 74, left hemisphere 473.3
2584 Male, age 75, left hemisphere 465.6
2725 Female, age 75, unknown 459.4
2785 Male, age 18, unknown 444.2
1954 Female, age 42, unknown 443.1
2823 Male, age 76, right hemisphere 394.3
Substantia nigra
nTPM: 474.7
1851 Male, age 51, unknown 603.8
2665 Male, age 74, both hemispheres 575.6
2699 Male, age 18, unknown 507.0
2590 Female, age 75, unknown 486.3
1916 Female, age 42, unknown 481.2
2409 Female, age 72, unknown 453.8
1889 Female, age 72, unknown 430.7
2241 Male, age 72, unknown 428.0
1941 Male, age 53, unknown 394.8
2583 Male, age 75, right hemisphere 385.6
Superior colliculus
nTPM: 449.1
1995 Male, age 72, unknown 554.7
2587 Male, age 74, left hemisphere 534.9
1913 Female, age 42, unknown 508.4
1796 Male, age 53, unknown 463.4
2664 Male, age 75, both hemispheres 440.4
2668 Female, age 75, unknown 435.5
1839 Male, age 51, unknown 426.9
2261 Male, age 18, unknown 387.9
1895 Male, age 76, right hemisphere 380.7
2087 Female, age 72, unknown 358.5
Ventral tegmental area
nTPM: 500.8
1915 Female, age 42, unknown 566.3
2021 Male, age 53, unknown 542.4
2410 Female, age 72, unknown 518.2
2223 Female, age 72, unknown 509.4
1942 Male, age 51, unknown 469.3
2218 Male, age 76, both hemispheres 399.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1555.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1555.0
Samples: 183

Max nTPM: 3386.3
Min nTPM: 607.4
Std nTPM: 519.4
Median nTPM: 1467.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3386.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 3311.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3054.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2925.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2860.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2757.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2550.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2546.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2468.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2456.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2447.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.8
FF:10158-103A5 76 years, female 46.8

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