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  • NDUFB9
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:496.9 nTPM
HPA Brain:127.7 nTPM
GTEx:496.9 nTPM
FANTOM5:359.3 Scaled Tags Per Million
Pig:106.9 nTPM
Mouse:626.9 nTPM
Allen mouse:10.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.7
Sample id Sample description nTPM
Amygdala
nTPM: 127.7
2814 Male, age 76, right hemisphere 180.5
2514 Male, age 75, right hemisphere 132.8
2695 Female, age 67, right hemisphere 121.4
2517 Female, age 94, left hemisphere 115.1
1987 Female, age 91, left hemisphere 88.7
Basal amygdala
nTPM: 105.4
2609 Male, age 75, right hemisphere 134.8
1955 Male, age 76, both hemispheres 125.3
2243 Female, age 91, right hemisphere 100.1
2110 Male, age 80, left hemisphere 99.4
2685 Female, age 94, left hemisphere 98.2
2827 Female, age 67, right hemisphere 74.8
Central amygdala
nTPM: 110.8
1905 Male, age 76, both hemispheres 165.0
2826 Female, age 94, left hemisphere 118.5
2239 Male, age 80, left hemisphere 105.1
2515 Male, age 75, right hemisphere 86.3
2701 Female, age 91, right hemisphere 79.2
Corticomedial amygdala
nTPM: 105.0
2429 Female, age 94, left hemisphere 135.5
2240 Male, age 76, both hemispheres 125.0
2829 Male, age 80, left hemisphere 109.6
2428 Male, age 75, right hemisphere 101.0
2242 Female, age 91, right hemisphere 88.1
2535 Female, age 67, right hemisphere 70.9
Lateral amygdala
nTPM: 106.3
2516 Male, age 75, right hemisphere 158.1
1883 Male, age 76, both hemispheres 152.6
2534 Female, age 94, left hemisphere 114.4
2830 Female, age 67, right hemisphere 85.3
2255 Female, age 91, right hemisphere 63.9
2256 Male, age 80, left hemisphere 63.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

496.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 496.9
Samples: 181

Max nTPM: 2050.9
Min nTPM: 228.8
Std nTPM: 208.5
Median nTPM: 460.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2050.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1357.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1133.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1128.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1013.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 980.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 960.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 887.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 848.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 788.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 755.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 751.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 731.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 723.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 716.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 709.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 709.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 690.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 686.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 684.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 682.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 670.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 669.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 654.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 653.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 633.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 631.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 627.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 624.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 618.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 617.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 610.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 604.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 604.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 602.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 593.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 592.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 587.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 587.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 586.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 585.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 581.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 579.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 571.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 570.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 569.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 563.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 563.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 562.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 556.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 552.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 552.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 550.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 549.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 541.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 539.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 538.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 535.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 532.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 532.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 531.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 530.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 527.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 522.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 519.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 515.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 515.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 513.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 511.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 507.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 497.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 495.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 493.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 492.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 492.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 492.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 492.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 489.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 488.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 487.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 486.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 485.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 484.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 479.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 477.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 476.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 466.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 466.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 465.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 462.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 460.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 459.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 458.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 457.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 456.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 454.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 453.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 448.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 448.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 447.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 444.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 443.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 440.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 436.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 435.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 434.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 432.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 430.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 423.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 422.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 422.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 414.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 414.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 411.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 410.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 410.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 408.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 407.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 400.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 398.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 394.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 394.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 394.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 386.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 385.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 384.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 384.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 379.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 378.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 377.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 374.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 372.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 371.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 370.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 368.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 367.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 367.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 364.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 363.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 363.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 351.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 350.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 348.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 348.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 347.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 345.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 343.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 340.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 339.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 339.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 337.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 336.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 335.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 335.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 335.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 330.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 329.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 329.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 323.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 322.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 318.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 311.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 310.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 310.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 306.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 304.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 300.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 297.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 296.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 292.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 289.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 285.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 275.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 275.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 260.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 253.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 253.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 246.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 239.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 230.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 228.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

359.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 359.3
FF:10151-102I7 76 years, female 359.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.9
Pig sample Sample description nTPM
Amygdala
nTPM: 106.9
Samples: 4

Max nTPM: 148.2
Min nTPM: 86.9
Sample A Female 148.2
Sample B Female 96.9
Sample C Male 95.6
Sample D Male 86.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

626.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 626.9
Samples: 4

Max nTPM: 700.8
Min nTPM: 565.3
Sample A Male 565.3
Sample B Male 638.7
Sample C Female 700.8
Sample D Female 602.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
68631911 Antisense, RP_050125_01_C12, Mouse strain C57BL/6J (56 days, male) 10.0

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