BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:288.4 nTPM
HPA Brain:515.5 nTPM
GTEx:288.4 nTPM
FANTOM5:538.3 Scaled Tags Per Million
Macaque:92.2 nTPM
Mouse:131.2 nTPM
Rat:145.5 nTPM
Pig:176.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 515.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 411.4
2019 Male, age 18, unknown 551.1
2411 Female, age 72, unknown 504.9
1870 Female, age 42, unknown 500.2
1830 Male, age 51, unknown 495.8
1833 Male, age 53, unknown 450.2
2828 Female, age 72, unknown 413.7
2586 Male, age 75, left hemisphere 367.1
1827 Male, age 72, unknown 296.8
2219 Male, age 76, both hemispheres 268.8
2666 Male, age 74, left hemisphere 265.4
Dorsal raphe nucleus
nTPM: 326.3
2750 Male, age 76, both hemispheres 490.8
2016 Female, age 72, unknown 340.5
1828 Male, age 53, unknown 319.1
2047 Male, age 72, unknown 242.3
2298 Female, age 72, unknown 238.8
Inferior colliculus
nTPM: 271.9
1890 Male, age 53, unknown 310.7
1848 Female, age 42, unknown 293.5
2097 Female, age 72, unknown 244.1
2849 Male, age 72, unknown 239.4
Median raphe nucleus
nTPM: 341.3
2220 Male, age 76, midline 341.3
Periaquaductal grey, anterior
nTPM: 277.5
2502 Female, age 75, unknown 312.7
1795 Male, age 51, unknown 266.3
1947 Male, age 18, unknown 253.5
Periaquaductal grey, dorsal
nTPM: 267.4
2850 Male, age 76, both hemispheres 343.3
2464 Female, age 72, unknown 295.5
1831 Male, age 72, unknown 262.7
1840 Male, age 53, unknown 168.3
Periaquaductal grey, lateral
nTPM: 347.9
2140 Male, age 76, both hemispheres 404.8
2272 Male, age 74, both hemispheres 336.9
2053 Male, age 18, unknown 302.1
Pretectal area
nTPM: 301.9
2316 Male, age 76, right hemisphere 412.7
2273 Male, age 74, both hemispheres 402.7
2667 Female, age 75, unknown 357.4
1815 Male, age 53, unknown 347.6
2407 Male, age 75, both hemispheres 318.0
1817 Female, age 42, unknown 305.4
2007 Male, age 72, unknown 281.8
2825 Male, age 18, unknown 281.5
2224 Female, age 72, unknown 257.1
1944 Female, age 72, unknown 192.9
1816 Male, age 51, unknown 164.2
Red nucleus
nTPM: 515.5
1904 Male, age 53, unknown 627.5
2769 Male, age 72, unknown 625.1
1865 Male, age 51, unknown 621.8
2227 Male, age 72, unknown 619.2
2785 Male, age 18, unknown 599.1
1954 Female, age 42, unknown 568.9
1821 Female, age 72, unknown 546.3
2503 Female, age 72, unknown 496.3
2823 Male, age 76, right hemisphere 474.9
2588 Male, age 74, left hemisphere 349.3
2584 Male, age 75, left hemisphere 336.8
2725 Female, age 75, unknown 321.0
Substantia nigra
nTPM: 338.6
1851 Male, age 51, unknown 428.8
2583 Male, age 75, right hemisphere 408.5
2590 Female, age 75, unknown 394.2
2409 Female, age 72, unknown 388.9
2699 Male, age 18, unknown 367.3
1916 Female, age 42, unknown 306.2
1889 Female, age 72, unknown 298.3
1941 Male, age 53, unknown 285.4
2241 Male, age 72, unknown 267.3
2665 Male, age 74, both hemispheres 241.3
Superior colliculus
nTPM: 324.2
1995 Male, age 72, unknown 505.9
1913 Female, age 42, unknown 465.0
2587 Male, age 74, left hemisphere 373.4
1839 Male, age 51, unknown 323.6
2668 Female, age 75, unknown 297.3
1796 Male, age 53, unknown 295.5
1895 Male, age 76, right hemisphere 258.7
2664 Male, age 75, both hemispheres 255.9
2087 Female, age 72, unknown 245.8
2261 Male, age 18, unknown 221.0
Ventral tegmental area
nTPM: 413.6
2223 Female, age 72, unknown 587.6
2410 Female, age 72, unknown 436.8
2021 Male, age 53, unknown 391.4
1942 Male, age 51, unknown 362.8
1915 Female, age 42, unknown 356.0
2218 Male, age 76, both hemispheres 347.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 288.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 288.4
Samples: 183

Max nTPM: 821.6
Min nTPM: 47.3
Std nTPM: 120.0
Median nTPM: 259.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 821.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 708.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 676.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 629.3
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 624.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 583.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 578.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 558.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 543.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 506.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 501.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 538.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 538.3
FF:10158-103A5 76 years, female 538.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 92.2
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 92.2
Samples: 1

Max nTPM: 92.2
Min nTPM: 92.2
Sample A 92.2
Midbrain
nTPM: 77.1
Samples: 1

Max nTPM: 77.1
Min nTPM: 77.1
Sample A 77.1
Superior colliculi
nTPM: 57.7
Samples: 1

Max nTPM: 57.7
Min nTPM: 57.7
Sample A 57.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 176.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 155.3
Samples: 3

Max nTPM: 209.6
Min nTPM: 117.8
Sample A Female 138.6
Sample B Female 209.6
Sample C Male 117.8
Midbrain
nTPM: 81.0
Samples: 3

Max nTPM: 98.1
Min nTPM: 57.7
Sample B Female 98.1
Sample C Male 87.1
Sample D Male 57.7
Periaqueductal gray
nTPM: 109.3
Samples: 3

Max nTPM: 124.2
Min nTPM: 95.0
Sample B Female 95.0
Sample C Male 108.7
Sample D Male 124.2
Superior colliculi
nTPM: 176.1
Samples: 4

Max nTPM: 302.4
Min nTPM: 119.2
Sample A Female 162.9
Sample B Female 302.4
Sample C Male 119.2
Sample D Male 119.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 131.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.2
Samples: 4

Max nTPM: 145.0
Min nTPM: 119.8
Sample A 119.8
Sample B 119.8
Sample C 145.0
Sample D 140.2

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 145.5
Rat sample Sample description nTPM
Midbrain
nTPM: 145.5
Samples: 4

Max nTPM: 158.0
Min nTPM: 134.5
Sample A 136.6
Sample A 158.0
Sample A 152.9
Sample A 134.5

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