MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:179.3 nTPM
HPA Brain:80.4 nTPM
GTEx:179.3 nTPM
FANTOM5:163.7 Scaled Tags Per Million
Pig:144.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
2828 Female, age 72, unknown 62.8
1870 Female, age 42, unknown 53.5
2666 Male, age 74, left hemisphere 52.6
1827 Male, age 72, unknown 46.2
1833 Male, age 53, unknown 38.3
2411 Female, age 72, unknown 37.4
2586 Male, age 75, left hemisphere 34.5
2019 Male, age 18, unknown 31.3
1830 Male, age 51, unknown 29.3
2219 Male, age 76, both hemispheres 26.6
Dorsal raphe nucleus
nTPM: 59.3
2298 Female, age 72, unknown 81.9
2016 Female, age 72, unknown 78.3
1828 Male, age 53, unknown 49.4
2047 Male, age 72, unknown 45.5
2750 Male, age 76, both hemispheres 41.5
Inferior colliculus
nTPM: 43.1
1890 Male, age 53, unknown 55.5
2097 Female, age 72, unknown 52.1
1848 Female, age 42, unknown 34.1
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 51.3
2220 Male, age 76, midline 51.3
Periaquaductal grey, anterior
nTPM: 64.7
1795 Male, age 51, unknown 84.0
1947 Male, age 18, unknown 64.0
2502 Female, age 75, unknown 46.1
Periaquaductal grey, dorsal
nTPM: 63.4
1831 Male, age 72, unknown 77.5
2850 Male, age 76, both hemispheres 76.0
1840 Male, age 53, unknown 51.5
2464 Female, age 72, unknown 48.6
Periaquaductal grey, lateral
nTPM: 80.4
2140 Male, age 76, both hemispheres 87.4
2053 Male, age 18, unknown 86.3
2272 Male, age 74, both hemispheres 67.5
Pretectal area
nTPM: 51.0
2224 Female, age 72, unknown 70.3
2273 Male, age 74, both hemispheres 69.9
2667 Female, age 75, unknown 65.3
2825 Male, age 18, unknown 53.7
1944 Female, age 72, unknown 48.9
1817 Female, age 42, unknown 48.7
2316 Male, age 76, right hemisphere 46.2
1816 Male, age 51, unknown 45.8
1815 Male, age 53, unknown 42.4
2407 Male, age 75, both hemispheres 38.3
2007 Male, age 72, unknown 31.6
Red nucleus
nTPM: 43.7
2588 Male, age 74, left hemisphere 59.1
1954 Female, age 42, unknown 54.9
2725 Female, age 75, unknown 50.2
2503 Female, age 72, unknown 48.8
2769 Male, age 72, unknown 47.8
2227 Male, age 72, unknown 46.5
1821 Female, age 72, unknown 44.2
1904 Male, age 53, unknown 40.6
1865 Male, age 51, unknown 37.9
2584 Male, age 75, left hemisphere 34.3
2823 Male, age 76, right hemisphere 30.5
2785 Male, age 18, unknown 29.7
Substantia nigra
nTPM: 50.3
1851 Male, age 51, unknown 77.9
2699 Male, age 18, unknown 71.2
2665 Male, age 74, both hemispheres 65.5
1916 Female, age 42, unknown 50.5
1941 Male, age 53, unknown 46.5
2590 Female, age 75, unknown 46.5
2583 Male, age 75, right hemisphere 42.4
1889 Female, age 72, unknown 36.6
2409 Female, age 72, unknown 33.1
2241 Male, age 72, unknown 32.3
Superior colliculus
nTPM: 54.3
1995 Male, age 72, unknown 110.5
1913 Female, age 42, unknown 80.5
2087 Female, age 72, unknown 57.8
2587 Male, age 74, left hemisphere 55.4
2261 Male, age 18, unknown 51.4
1796 Male, age 53, unknown 50.1
2668 Female, age 75, unknown 45.4
1839 Male, age 51, unknown 37.7
2664 Male, age 75, both hemispheres 32.6
1895 Male, age 76, right hemisphere 22.1
Ventral tegmental area
nTPM: 61.1
2021 Male, age 53, unknown 82.2
1915 Female, age 42, unknown 70.5
1942 Male, age 51, unknown 60.4
2223 Female, age 72, unknown 55.3
2218 Male, age 76, both hemispheres 50.6
2410 Female, age 72, unknown 47.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 179.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 179.3
Samples: 183

Max nTPM: 1277.6
Min nTPM: 24.5
Std nTPM: 128.9
Median nTPM: 152.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1277.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 760.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 509.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 487.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 445.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 440.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 431.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 411.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 409.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 393.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 372.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 163.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.7
FF:10158-103A5 76 years, female 163.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 144.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.9
Samples: 4

Max nTPM: 208.4
Min nTPM: 38.7
Sample A Female 38.7
Sample B Female 43.2
Sample C Male 208.4
Sample D Male 149.1
Midbrain
nTPM: 71.6
Samples: 4

Max nTPM: 144.1
Min nTPM: 27.6
Sample A Female 37.4
Sample B Female 27.6
Sample C Male 144.1
Sample D Male 77.4
Periaqueductal gray
nTPM: 144.2
Samples: 3

Max nTPM: 233.7
Min nTPM: 33.0
Sample B Female 33.0
Sample C Male 233.7
Sample D Male 165.9
Superior colliculi
nTPM: 85.7
Samples: 4

Max nTPM: 159.9
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 21.7
Sample C Male 159.9
Sample D Male 139.6

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