A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
151.6
nTPM
Monaco:
44.2
nTPM
Schmiedel:
141.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.6
HPA sample
nTPM
Classical monocyte nTPM: 116.3
Samples: 6
Max nTPM: 159.3
Min nTPM: 76.3
P10809_1003
76.3
P10809_1020
115.6
P10809_1039
134.3
P10809_1058
84.6
P10809_1080
127.6
P10809_1107
159.3
Intermediate monocyte nTPM: 151.6
Samples: 6
Max nTPM: 245.3
Min nTPM: 82.2
P10809_1004
82.2
P10809_1023
147.6
P10809_1042
130.0
P10809_1061
152.6
P10809_1081
152.0
P10809_1108
245.3
Non-classical monocyte nTPM: 130.9
Samples: 5
Max nTPM: 212.4
Min nTPM: 82.8
P10809_1005
95.7
P10809_1053
120.8
P10809_1072
82.8
P10809_1082
142.9
P10809_1109
212.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.2
Monaco sample
nTPM
Classical monocyte nTPM: 40.7
Samples: 4
Max nTPM: 51.9
Min nTPM: 26.5
RHH5313_R3680
34.9
RHH5221_R3593
26.5
RHH5250_R3622
51.9
RHH5279_R3651
49.3
Intermediate monocyte nTPM: 44.3
Samples: 4
Max nTPM: 49.9
Min nTPM: 39.9
RHH5314_R3681
41.4
RHH5222_R3594
45.8
RHH5251_R3623
39.9
RHH5280_R3652
49.9
Non-classical monocyte nTPM: 30.9
Samples: 4
Max nTPM: 36.2
Min nTPM: 27.0
RHH5315_R3682
27.3
RHH5223_R3595
32.9
RHH5252_R3624
27.0
RHH5281_R3653
36.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.1
Schmiedel sample id
TPM
Classical monocyte TPM: 141.1
Samples: 91
Max TPM: 199.1
Min TPM: 115.3
MONOCYTES_1
199.1
MONOCYTES_2
194.3
MONOCYTES_3
178.0
MONOCYTES_4
166.3
MONOCYTES_5
163.3
MONOCYTES_6
161.9
MONOCYTES_7
161.2
MONOCYTES_8
161.0
MONOCYTES_9
160.6
MONOCYTES_10
160.1
MONOCYTES_11
159.2
MONOCYTES_12
158.3
MONOCYTES_13
157.3
MONOCYTES_14
156.3
MONOCYTES_15
155.8
MONOCYTES_16
155.2
MONOCYTES_17
154.0
MONOCYTES_18
153.5
MONOCYTES_19
152.9
MONOCYTES_20
152.2
MONOCYTES_21
152.1
MONOCYTES_22
151.7
MONOCYTES_23
151.5
MONOCYTES_24
149.8
MONOCYTES_25
149.1
MONOCYTES_26
148.3
MONOCYTES_27
148.2
MONOCYTES_28
148.1
MONOCYTES_29
147.4
MONOCYTES_30
147.2
MONOCYTES_31
145.5
MONOCYTES_32
144.6
MONOCYTES_33
143.9
MONOCYTES_34
143.8
MONOCYTES_35
143.7
MONOCYTES_36
143.3
MONOCYTES_37
143.2
MONOCYTES_38
143.1
MONOCYTES_39
143.0
MONOCYTES_40
142.9
MONOCYTES_41
142.7
MONOCYTES_42
142.3
MONOCYTES_43
141.9
MONOCYTES_44
141.3
MONOCYTES_45
141.0
MONOCYTES_46
140.9
MONOCYTES_47
139.5
MONOCYTES_48
139.3
MONOCYTES_49
138.9
MONOCYTES_50
138.4
MONOCYTES_51
137.9
MONOCYTES_52
137.6
MONOCYTES_53
136.9
MONOCYTES_54
136.6
MONOCYTES_55
135.8
MONOCYTES_56
135.7
MONOCYTES_57
135.7
MONOCYTES_58
135.1
MONOCYTES_59
134.6
MONOCYTES_60
134.5
MONOCYTES_61
134.5
MONOCYTES_62
134.4
MONOCYTES_63
133.9
MONOCYTES_64
131.4
MONOCYTES_65
131.1
MONOCYTES_66
130.7
MONOCYTES_67
130.2
MONOCYTES_68
130.2
MONOCYTES_69
129.6
MONOCYTES_70
129.0
MONOCYTES_71
128.7
MONOCYTES_72
126.1
MONOCYTES_73
125.6
MONOCYTES_74
125.6
MONOCYTES_75
125.3
MONOCYTES_76
125.2
MONOCYTES_77
125.1
MONOCYTES_78
125.1
MONOCYTES_79
124.2
MONOCYTES_80
124.1
MONOCYTES_81
122.1
MONOCYTES_82
121.3
MONOCYTES_83
121.3
MONOCYTES_84
121.1
MONOCYTES_85
120.6
MONOCYTES_86
120.0
MONOCYTES_87
118.9
MONOCYTES_88
117.1
MONOCYTES_89
116.7
MONOCYTES_90
115.4
MONOCYTES_91
115.3
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Non-classical monocyte TPM: 123.3
Samples: 90
Max TPM: 166.5
Min TPM: 79.4
M2_1
166.5
M2_2
164.8
M2_3
161.8
M2_4
160.1
M2_5
159.1
M2_6
154.4
M2_7
152.6
M2_8
150.8
M2_9
149.9
M2_10
147.7
M2_11
146.6
M2_12
144.3
M2_13
142.5
M2_14
141.8
M2_15
141.1
M2_16
140.4
M2_17
139.9
M2_18
139.4
M2_19
138.6
M2_20
138.3
M2_21
135.8
M2_22
134.7
M2_23
132.6
M2_24
130.0
M2_25
129.8
M2_26
129.2
M2_27
128.9
M2_28
128.9
M2_29
128.8
M2_30
128.2
M2_31
128.1
M2_32
128.0
M2_33
128.0
M2_34
127.8
M2_35
127.3
M2_36
126.1
M2_37
125.6
M2_38
125.0
M2_39
124.9
M2_40
124.6
M2_41
124.4
M2_42
124.0
M2_43
123.5
M2_44
123.5
M2_45
123.4
M2_46
122.5
M2_47
121.8
M2_48
121.0
M2_49
120.3
M2_50
120.2
M2_51
120.1
M2_52
119.8
M2_53
119.7
M2_54
119.5
M2_55
118.3
M2_56
117.4
M2_57
116.7
M2_58
116.7
M2_59
116.6
M2_60
116.1
M2_61
115.4
M2_62
114.2
M2_63
114.1
M2_64
114.0
M2_65
113.8
M2_66
113.7
M2_67
113.6
M2_68
112.5
M2_69
112.3
M2_70
112.2
M2_71
110.0
M2_72
109.2
M2_73
109.0
M2_74
108.6
M2_75
108.5
M2_76
107.2
M2_77
107.0
M2_78
106.8
M2_79
105.4
M2_80
104.2
M2_81
102.1
M2_82
100.3
M2_83
99.5
M2_84
97.4
M2_85
94.5
M2_86
91.9
M2_87
90.5
M2_88
84.2
M2_89
83.3
M2_90
79.4
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