MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.7 nTPM
HPA Brain:7.1 nTPM
GTEx:26.7 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:41.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 7.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.6
2219 Male, age 76, both hemispheres 7.1
1827 Male, age 72, unknown 6.8
1870 Female, age 42, unknown 6.6
2828 Female, age 72, unknown 6.3
2411 Female, age 72, unknown 6.2
1833 Male, age 53, unknown 5.7
1830 Male, age 51, unknown 5.4
2019 Male, age 18, unknown 5.1
2666 Male, age 74, left hemisphere 3.6
2586 Male, age 75, left hemisphere 3.2
Dorsal raphe nucleus
nTPM: 5.2
2298 Female, age 72, unknown 5.7
2750 Male, age 76, both hemispheres 5.7
2047 Male, age 72, unknown 5.2
1828 Male, age 53, unknown 4.8
2016 Female, age 72, unknown 4.8
Inferior colliculus
nTPM: 6.3
1848 Female, age 42, unknown 6.8
2097 Female, age 72, unknown 6.6
1890 Male, age 53, unknown 6.4
2849 Male, age 72, unknown 5.3
Median raphe nucleus
nTPM: 4.8
2220 Male, age 76, midline 4.8
Periaquaductal grey, anterior
nTPM: 6.8
1947 Male, age 18, unknown 7.7
1795 Male, age 51, unknown 6.8
2502 Female, age 75, unknown 5.8
Periaquaductal grey, dorsal
nTPM: 7.1
1840 Male, age 53, unknown 9.5
2464 Female, age 72, unknown 7.1
2850 Male, age 76, both hemispheres 6.8
1831 Male, age 72, unknown 4.9
Periaquaductal grey, lateral
nTPM: 4.8
2140 Male, age 76, both hemispheres 5.6
2053 Male, age 18, unknown 5.0
2272 Male, age 74, both hemispheres 3.8
Pretectal area
nTPM: 6.6
1817 Female, age 42, unknown 8.4
2007 Male, age 72, unknown 7.7
1816 Male, age 51, unknown 7.3
2224 Female, age 72, unknown 7.1
2825 Male, age 18, unknown 6.8
1944 Female, age 72, unknown 6.6
2273 Male, age 74, both hemispheres 6.3
2667 Female, age 75, unknown 6.3
2316 Male, age 76, right hemisphere 6.2
1815 Male, age 53, unknown 5.7
2407 Male, age 75, both hemispheres 4.4
Red nucleus
nTPM: 6.6
2725 Female, age 75, unknown 8.1
1821 Female, age 72, unknown 7.4
2227 Male, age 72, unknown 7.4
2769 Male, age 72, unknown 7.4
1954 Female, age 42, unknown 7.1
2503 Female, age 72, unknown 7.0
1904 Male, age 53, unknown 6.7
2823 Male, age 76, right hemisphere 6.7
2584 Male, age 75, left hemisphere 5.7
2785 Male, age 18, unknown 5.2
2588 Male, age 74, left hemisphere 5.1
1865 Male, age 51, unknown 4.9
Substantia nigra
nTPM: 6.2
1851 Male, age 51, unknown 7.3
2409 Female, age 72, unknown 6.8
2699 Male, age 18, unknown 6.8
1889 Female, age 72, unknown 6.4
1941 Male, age 53, unknown 6.4
2241 Male, age 72, unknown 6.1
2665 Male, age 74, both hemispheres 5.9
2590 Female, age 75, unknown 5.8
2583 Male, age 75, right hemisphere 5.4
1916 Female, age 42, unknown 5.0
Superior colliculus
nTPM: 7.0
2587 Male, age 74, left hemisphere 10.0
1895 Male, age 76, right hemisphere 8.9
2668 Female, age 75, unknown 7.1
2087 Female, age 72, unknown 6.8
2261 Male, age 18, unknown 6.5
1839 Male, age 51, unknown 6.4
1796 Male, age 53, unknown 6.3
1913 Female, age 42, unknown 6.0
1995 Male, age 72, unknown 6.0
2664 Male, age 75, both hemispheres 5.9
Ventral tegmental area
nTPM: 6.2
2410 Female, age 72, unknown 7.1
1942 Male, age 51, unknown 6.6
1915 Female, age 42, unknown 6.4
2218 Male, age 76, both hemispheres 6.3
2223 Female, age 72, unknown 5.5
2021 Male, age 53, unknown 5.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.7
Samples: 183

Max nTPM: 55.1
Min nTPM: 6.4
Std nTPM: 8.8
Median nTPM: 25.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 55.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 54.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 52.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 52.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 48.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 44.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 43.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 42.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 41.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 41.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 25.2
Min nTPM: 15.4
Sample A Female 25.2
Sample B Female 17.2
Sample C Male 17.7
Sample D Male 15.4
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 23.9
Min nTPM: 19.0
Sample A Female 23.9
Sample B Female 21.4
Sample C Male 19.6
Sample D Male 19.0
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 18.0
Min nTPM: 17.1
Sample B Female 17.1
Sample C Male 17.2
Sample D Male 18.0
Superior colliculi
nTPM: 19.9
Samples: 4

Max nTPM: 23.0
Min nTPM: 17.7
Sample A Female 23.0
Sample B Female 18.1
Sample C Male 20.6
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.7
Samples: 4

Max nTPM: 43.0
Min nTPM: 39.6
Sample A Male 42.5
Sample B Male 41.7
Sample C Female 39.6
Sample D Female 43.0

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