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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:561.2 nTPM
HPA Brain:940.2 nTPM
GTEx:561.2 nTPM
FANTOM5:713.8 Scaled Tags Per Million
Pig:709.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

940.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 940.2
2565 Male, age 75, midline 1160.1
1981 Female, age 72, midline 1068.7
2194 Female, age 79, both hemispheres 982.7
2816 Male, age 47, midline 793.2
2048 Male, age 55, midline 696.4
Cervical spinal cord, dorsal horn
nTPM: 881.2
2173 Female, age 72, unknown 1162.6
2069 Male, age 47, both hemispheres 925.9
2297 Male, age 75, both hemispheres 842.4
2296 Male, age 66, both hemispheres 828.1
2721 Male, age 90, both hemispheres 792.3
1877 Male, age 55, unknown 736.2
Cervical spinal cord, ventral horn
nTPM: 930.8
2480 Male, age 75, both hemispheres 984.3
2295 Male, age 66, both hemispheres 943.9
2098 Female, age 72, unknown 931.1
2820 Female, age 79, both hemispheres 918.4
2068 Male, age 55, unknown 909.1
2809 Male, age 90, both hemispheres 897.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

561.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 561.2
Samples: 204

Max nTPM: 1108.5
Min nTPM: 300.9
Std nTPM: 127.0
Median nTPM: 542.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1108.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1061.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1041.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 923.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 896.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 891.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 869.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 842.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 832.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 805.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 798.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 798.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 789.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 777.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 763.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 744.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 735.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 730.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 717.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 714.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 711.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 695.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 688.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 687.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 683.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 680.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 679.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 672.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 670.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 669.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 665.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 664.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 663.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 656.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 652.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 651.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 648.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 647.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 645.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 644.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 640.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 636.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 636.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 634.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 632.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 632.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 628.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 628.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 619.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 616.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 614.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 614.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 610.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 610.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 609.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 604.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 604.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 603.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 598.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 596.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 595.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 595.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 594.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 593.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 592.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 591.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 590.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 590.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 589.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 585.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 583.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 583.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 580.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 577.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 574.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 574.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 573.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 573.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 571.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 570.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 569.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 568.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 568.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 567.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 566.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 565.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 565.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 564.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 562.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 560.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 559.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 556.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 553.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 553.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 551.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 551.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 548.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 547.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 547.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 544.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 542.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 542.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 542.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 540.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 538.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 536.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 536.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 534.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 534.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 534.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 534.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 531.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 529.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 529.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 528.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 527.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 525.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 523.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 523.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 520.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 519.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 517.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 516.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 514.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 513.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 513.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 513.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 511.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 511.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 511.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 511.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 511.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 509.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 508.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 507.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 507.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 506.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 506.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 505.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 501.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 501.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 501.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 500.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 499.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 499.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 499.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 496.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 495.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 492.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 489.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 488.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 485.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 481.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 480.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 478.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 476.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 476.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 473.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 472.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 470.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 469.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 464.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 463.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 463.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 456.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 455.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 451.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 449.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 449.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 448.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 448.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 447.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 446.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 443.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 442.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 440.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 438.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 438.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 436.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 436.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 429.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 428.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 428.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 421.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 421.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 420.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 419.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 416.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 413.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 413.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 413.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 409.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 396.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 395.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 388.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 386.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 380.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 374.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 368.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 361.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 349.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 347.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 338.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 300.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

713.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 713.8
FF:10181-103D1 60 years, female 977.2
FF:10159-103A6 76 years, female 450.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

709.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 581.1
Samples: 4

Max nTPM: 640.3
Min nTPM: 515.2
Sample A Female 557.7
Sample B Female 515.2
Sample C Male 640.3
Sample D Male 611.1
Ventral spinal cord
nTPM: 709.3
Samples: 4

Max nTPM: 805.3
Min nTPM: 594.3
Sample A Female 708.9
Sample B Female 728.7
Sample C Male 805.3
Sample D Male 594.3

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