A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
82.4
nTPM
Monaco:
281.3
nTPM
Schmiedel:
134.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.4
HPA sample
nTPM
Classical monocyte nTPM: 50.7
Samples: 6
Max nTPM: 60.9
Min nTPM: 40.1
P10809_1003
60.9
P10809_1020
54.5
P10809_1039
47.3
P10809_1058
47.8
P10809_1080
53.7
P10809_1107
40.1
Intermediate monocyte nTPM: 66.7
Samples: 6
Max nTPM: 71.9
Min nTPM: 59.6
P10809_1004
68.1
P10809_1023
68.0
P10809_1042
67.2
P10809_1061
71.9
P10809_1081
65.4
P10809_1108
59.6
Non-classical monocyte nTPM: 82.4
Samples: 5
Max nTPM: 88.9
Min nTPM: 76.8
P10809_1005
79.3
P10809_1053
88.9
P10809_1072
82.9
P10809_1082
84.2
P10809_1109
76.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
281.3
Monaco sample
nTPM
Classical monocyte nTPM: 232.4
Samples: 4
Max nTPM: 263.1
Min nTPM: 192.8
RHH5313_R3680
256.7
RHH5221_R3593
263.1
RHH5250_R3622
192.8
RHH5279_R3651
217.1
Intermediate monocyte nTPM: 218.0
Samples: 4
Max nTPM: 237.1
Min nTPM: 181.4
RHH5314_R3681
237.1
RHH5222_R3594
236.5
RHH5251_R3623
181.4
RHH5280_R3652
216.8
Non-classical monocyte nTPM: 281.3
Samples: 4
Max nTPM: 351.0
Min nTPM: 205.2
RHH5315_R3682
291.9
RHH5223_R3595
351.0
RHH5252_R3624
205.2
RHH5281_R3653
277.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
134.4
Schmiedel sample id
TPM
Classical monocyte TPM: 55.4
Samples: 91
Max TPM: 96.9
Min TPM: 23.5
MONOCYTES_1
96.9
MONOCYTES_2
95.5
MONOCYTES_3
85.9
MONOCYTES_4
85.7
MONOCYTES_5
85.1
MONOCYTES_6
85.0
MONOCYTES_7
84.8
MONOCYTES_8
84.1
MONOCYTES_9
79.4
MONOCYTES_10
75.9
MONOCYTES_11
73.8
MONOCYTES_12
73.2
MONOCYTES_13
70.4
MONOCYTES_14
69.9
MONOCYTES_15
69.8
MONOCYTES_16
69.8
MONOCYTES_17
69.8
MONOCYTES_18
69.7
MONOCYTES_19
69.2
MONOCYTES_20
69.0
MONOCYTES_21
69.0
MONOCYTES_22
66.7
MONOCYTES_23
66.5
MONOCYTES_24
66.1
MONOCYTES_25
65.7
MONOCYTES_26
65.6
MONOCYTES_27
65.6
MONOCYTES_28
65.5
MONOCYTES_29
65.5
MONOCYTES_30
64.8
MONOCYTES_31
62.6
MONOCYTES_32
62.1
MONOCYTES_33
61.9
MONOCYTES_34
61.0
MONOCYTES_35
60.7
MONOCYTES_36
60.3
MONOCYTES_37
59.9
MONOCYTES_38
59.7
MONOCYTES_39
59.2
MONOCYTES_40
59.0
MONOCYTES_41
57.5
MONOCYTES_42
56.6
MONOCYTES_43
56.1
MONOCYTES_44
55.6
MONOCYTES_45
55.4
MONOCYTES_46
54.3
MONOCYTES_47
54.3
MONOCYTES_48
53.5
MONOCYTES_49
53.1
MONOCYTES_50
52.8
MONOCYTES_51
52.3
MONOCYTES_52
51.5
MONOCYTES_53
50.9
MONOCYTES_54
50.4
MONOCYTES_55
49.8
MONOCYTES_56
49.5
MONOCYTES_57
48.8
MONOCYTES_58
48.2
MONOCYTES_59
48.0
MONOCYTES_60
46.5
MONOCYTES_61
46.1
MONOCYTES_62
45.4
MONOCYTES_63
45.2
MONOCYTES_64
44.9
MONOCYTES_65
44.7
MONOCYTES_66
43.1
MONOCYTES_67
42.9
MONOCYTES_68
42.5
MONOCYTES_69
42.2
MONOCYTES_70
41.8
MONOCYTES_71
41.6
MONOCYTES_72
40.9
MONOCYTES_73
40.3
MONOCYTES_74
37.5
MONOCYTES_75
37.5
MONOCYTES_76
37.4
MONOCYTES_77
37.3
MONOCYTES_78
36.6
MONOCYTES_79
36.0
MONOCYTES_80
35.8
MONOCYTES_81
35.5
MONOCYTES_82
35.3
MONOCYTES_83
34.7
MONOCYTES_84
34.4
MONOCYTES_85
34.3
MONOCYTES_86
33.0
MONOCYTES_87
31.6
MONOCYTES_88
31.2
MONOCYTES_89
28.3
MONOCYTES_90
24.0
MONOCYTES_91
23.5
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Non-classical monocyte TPM: 134.4
Samples: 90
Max TPM: 240.7
Min TPM: 70.8
M2_1
240.7
M2_2
220.5
M2_3
214.9
M2_4
207.9
M2_5
206.8
M2_6
203.7
M2_7
203.3
M2_8
202.7
M2_9
202.0
M2_10
197.9
M2_11
194.1
M2_12
190.9
M2_13
180.2
M2_14
177.5
M2_15
175.4
M2_16
174.1
M2_17
173.8
M2_18
165.6
M2_19
164.6
M2_20
160.7
M2_21
160.6
M2_22
159.4
M2_23
155.4
M2_24
152.9
M2_25
147.3
M2_26
146.8
M2_27
146.3
M2_28
146.0
M2_29
145.6
M2_30
144.5
M2_31
141.8
M2_32
141.1
M2_33
140.4
M2_34
140.0
M2_35
139.0
M2_36
139.0
M2_37
138.5
M2_38
137.7
M2_39
136.7
M2_40
135.7
M2_41
133.9
M2_42
132.9
M2_43
132.2
M2_44
131.0
M2_45
129.7
M2_46
129.2
M2_47
129.1
M2_48
129.0
M2_49
128.8
M2_50
127.4
M2_51
126.7
M2_52
125.2
M2_53
121.8
M2_54
120.5
M2_55
120.5
M2_56
120.4
M2_57
119.3
M2_58
118.6
M2_59
117.6
M2_60
114.9
M2_61
113.4
M2_62
110.1
M2_63
108.3
M2_64
107.4
M2_65
106.5
M2_66
106.0
M2_67
104.3
M2_68
104.2
M2_69
102.5
M2_70
102.0
M2_71
100.7
M2_72
99.5
M2_73
98.8
M2_74
98.6
M2_75
98.4
M2_76
97.5
M2_77
95.2
M2_78
95.1
M2_79
94.8
M2_80
92.8
M2_81
90.4
M2_82
88.4
M2_83
87.5
M2_84
82.5
M2_85
80.1
M2_86
78.2
M2_87
77.4
M2_88
74.5
M2_89
73.0
M2_90
70.8
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